YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256793, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	801 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256793, gi|....

Description	E-value	Query Range	Subject Range
gi\|52002141, gi\|... - gi\|52784304\|ref\|YP_090133.1\| hypothetical protein BLi00484 [Bacillus licheniformis ATCC 14580], gi\|5...	0.0	[1..797]	[1..802]
gi\|221321663 - gi\|221321663\|ref\|ZP_03602957.1\| assimilatory nitrite reductase (subunit) [Bacillus subtilis subsp. s... gi\|221317400 - gi\|221317400\|ref\|ZP_03598694.1\| assimilatory nitrite reductase (subunit) [Bacillus subtilis subsp. s... NASD_BACSU - Nitrite reductase [NAD(P)H] OS=Bacillus subtilis (strain 168) GN=nasD PE=2 SV=1 NASD_BACSU - Nitrite reductase [NAD(P)H] OS=Bacillus subtilis GN=nasD PE=2 SV=1 gi\|221312466 - gi\|221312466\|ref\|ZP_03594271.1\| assimilatory nitrite reductase (subunit) [Bacillus subtilis subsp. s...	0.0	[2..797]	[3..800]
gi\|84321514 - gi\|84321514\|ref\|ZP_00969871.1\| COG1251: NAD(P)H-nitrite reductase [Pseudomonas aeruginosa C3719]	0.0	[1..801]	[7..817]
gi\|116049729, gi... - gi\|116049729\|ref\|YP_791464.1\| assimilatory nitrite reductase large subunit [Pseudomonas aeruginosa U...	0.0	[1..801]	[1..811]
gi\|84328102 - gi\|84328102\|ref\|ZP_00976113.1\| COG1251: NAD(P)H-nitrite reductase [Pseudomonas aeruginosa 2192]	0.0	[1..801]	[7..817]
gi\|107101212 - gi\|107101212\|ref\|ZP_01365130.1\| hypothetical protein PaerPA_01002244 [Pseudomonas aeruginosa PACS2]	0.0	[1..801]	[7..817]
gi\|9947761, gi\|1... - gi\|9947761\|gb\|AAG05170.1\|AE004603_10 assimilatory nitrite reductase large subunit [Pseudomonas aerug... gi\|11347466 - pir\|\|C83424 assimilatory nitrite reductase large subunit PA1781 [imported] - Pseudomonas aeruginosa ...	0.0	[1..801]	[1..811]
gi\|25486625 - pir\|\|E83726 assimilatory nitrite reductase (subunit) nasD [imported] - Bacillus halodurans (strain C... gi\|10173227, gi\|... - gi\|15613176\|ref\|NP_241479.1\| assimilatory nitrite reductase (subunit) [Bacillus halodurans C-125], g...	0.0	[1..796]	[1..798]
gi\|94414610 - gi\|94414610\|ref\|ZP_01294469.1\| hypothetical protein PaerP_01003685 [Pseudomonas aeruginosa PA7]	0.0	[1..801]	[7..817]
gi\|49481582, gi\|... - gi\|49481582\|ref\|YP_036299.1\| nitrite reductase [NAD(P)H], large subunit [Bacillus thuringiensis sero...	0.0	[1..801]	[1..801]

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Predicted Domain #1

Region A:
Residues: [1-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRLVMIGN GMAGIRCMEE ILKHDCDSYE ITIFGDEPHP NYNRIMLSHV LQGKTNIQDI  60
   61 IMNEYSWYEE NEITLYTNER VQSIDREEKV IMTEKNRTLT YDKLIIATGS SAFILPVEGS 120
  121 TLPGVTGFRT IEDTQFMMDT AKEKKKAVVI GGGLLGLEAA RGLIDLGMDV HVVHLMPSLM 180
  181 EQQLDTKAAS LLREDLEAQG MKFLMEKKTV KILGTNHVEG IQFEDGEVVD CDLIVMAVGI 240
  241 RPNTQIARDA GLIVNRGIVV NDYMLTNDES IYAVGECAEH DGIAYGLVAP LYEQGAILAK 300
  301 HISNLQTDGY SGSIVGTQLK VAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	1q1rA
Description:	Crystal Structure of Putidaredoxin Reductase from Pseudomonas putida
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on NADH or NADPH	3.16996423124828	bayes_pls_golite062009
oxidoreductase activity	2.84234192551392	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.79314033427747	bayes_pls_golite062009
catalytic activity	1.56773888754354	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.52244283583973	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.7514316327505	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [324-480]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CDLFSAGQIY EDDQTKAISI FNECKRSYKK VLIRDNKVVG IVLYGDTADG TRLFSMLKKE  60
   61 EDIQEYTPAS ILHKAGEESE LDVATMSADD TICGCNGVTK GTIVHAILEQ ELTTFEEVKG 120
  121 CTKAAGSCGK CRPLVEQVLS HTLGDAFDAS AQSAGMC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.08
Match:	2hu9A
Description:	No description for 2hu9A was found.

Predicted Domain #3

Region A:
Residues: [481-801]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GCTPLSRDEV VAAIHEKGLK SPKEVRNVLG FVHEDGCSKC RPALNYYLRM AIPEEYEDDK  60
   61 ASRFVNERMN GNIQHDGTFS VIPRMYGGVT TADDLMKIAE VAKKYDVPLV KITGASRIGL 120
  121 YGVKKQDLPN VWADLNMTSG YAYSKSLRNV KSCVGSRFCR FGTKDSLGLG MLLEQSLEMV 180
  181 DTPHKMKMGV TGCPRNCAEV LTKDFGVVCV ENGYQLYIGG NGGTEVREAD FVMIVPTEDD 240
  241 VLHIATAYMQ YYRETGIYGE RTAYWTERLD FDHIKEILQD ANMVTKLNER FQTARGTYKE 300
  301 AWGQALETKS LKAMYEVETV K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.154902
Match:	1aopA
Description:	SULFITE REDUCTASE STRUCTURE AT 1.6 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors	0.882506788158397	bayes_pls_golite062009
oxidoreductase activity	0.881751421934527	bayes_pls_golite062009
catalytic activity	0.767627914425245	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: