YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256618, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256618, gi|....

Description	E-value	Query Range	Subject Range
gi\|51976923, gi\|... - gi\|52143454\|ref\|YP_083373.1\| polysaccharide deacetylase [Bacillus cereus E33L], gi\|51976923\|gb\|AAU18...	1.0E-75	[1..275]	[1..275]
gi\|42737036, gi\|... - gi\|42781115\|ref\|NP_978362.1\| polysaccharide deacetylase, putative [Bacillus cereus ATCC 10987], gi\|4...	5.0E-75	[1..275]	[1..275]
gi\|49481185, gi\|... - gi\|49481185\|ref\|YP_036127.1\| polysaccharide deacetylase [Bacillus thuringiensis serovar konkukian st... gi\|228945605, gi... - gi\|228945605\|ref\|ZP_04107955.1\| Peptidoglycan N-acetylglucosamine deacetylase [Bacillus thuringiensi...	1.0E-74	[1..275]	[1..275]
gi\|30020099, gi\|... - gi\|30020099\|ref\|NP_831730.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus ATCC 145... gi\|228638845, gi... - gi\|229144605\|ref\|ZP_04273007.1\| Peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus BDRD-... gi\|229127395, gi... - gi\|229127395\|ref\|ZP_04256390.1\| Peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus BDRD-...	2.0E-74	[1..275]	[1..275]
gi\|47569997, gi\|... - gi\|47569997\|ref\|ZP_00240660.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus G9241]...	8.0E-74	[1..275]	[1..275]
gi\|89208903, gi\|... - gi\|89208903\|ref\|ZP_01187382.1\| Polysaccharide deacetylase [Bacillus weihenstephanensis KBAB4], gi\|89...	5.0E-68	[1..275]	[1..276]
gi\|75762524, gi\|... - gi\|75762524\|ref\|ZP_00742382.1\| Peptidoglycan N-acetylglucosamine deacetylase [Bacillus thuringiensis...	1.0E-65	[1..275]	[1..275]
gi\|20807347 - gi\|20807347\|ref\|NP_622518.1\| predicted xylanase/chitin deacetylase [Thermoanaerobacter tengcongensis... gi\|223489865, gi... - gi\|254478273\|ref\|ZP_05091653.1\| polysaccharide deacetylase family sporulation protein PdaB, putative... gi\|20807347, gi\|... - gi\|20807347\|ref\|NP_622518.1\| xylanase/chitin deacetylase [Thermoanaerobacter tengcongensis MB4], gi\|...	3.0E-52	[71..269]	[127..321]
gi\|166855789, gi... - gi\|76795727\|ref\|ZP_00778099.1\| Polysaccharide deacetylase [Thermoanaerobacter ethanolicus ATCC 33223... gi\|241884376, gi... - gi\|241903310\|ref\|ZP_04788036.1\| delta-lactam-biosynthetic de-N-acetylase [Thermoanaerobacter brockii...	1.0E-51	[33..266]	[68..288]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYFYSPEGF APYQWELERD VSYAYMPYNL FYYGDYIRIL PYTSIPQSYE VQMKADERGS  60
   61 WTPFSWVEKY AYAFSGPYNK AEVALTFDDG PDLEFTPKIL DKLKQHNVKA TFFLLGENAE 120
  121 KFPNVVKRIA NEGHVIGNHT YSHPNLAKVN DAEYRNQIIK TEEILNRLAG YAPKFIRPPY 180
  181 GEILEDQLKW ATEQNFMIVQ WSVDTVDWKG VSADTITNNV LGNSFPGSVI LQHSTPGGHL 240
  241 QGSVEALDKI IPQLKTKGAR FVTLPSMFQT SKERK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	2c1gA
Description:	Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.7139390771237	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009
binding	0.097268039040833	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: