YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256122, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	420 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256122, gi|....

Description	E-value	Query Range	Subject Range
gi\|90415223\|ref\|... - threonine dehydratase [marine gamma proteobacterium HTCC2207] gi\|90415223, gi\|... - gi\|90415223\|ref\|ZP_01223157.1\| threonine dehydratase [marine gamma proteobacterium HTCC2207], gi\|903...	1.0E-98	[19..419]	[12..408]
gi\|87281645, gi\|... - gi\|87303848\|ref\|ZP_01086553.1\| threonine dehydratase [Synechococcus sp. WH 5701], gi\|87281645\|gb\|EAQ...	2.0E-98	[3..419]	[3..409]
gi\|77868036, gi\|... - gi\|77953083\|ref\|ZP_00817494.1\| Threonine dehydratase I [Marinobacter aquaeolei VT8], gi\|77868036\|gb\|...	4.0E-98	[3..419]	[3..409]
gi\|152989630, gi... - gi\|94414836\|ref\|ZP_01294690.1\| hypothetical protein PaerP_01003416 [Pseudomonas aeruginosa PA7], gi\|...	9.0E-98	[1..419]	[1..409]
gi\|218889072, gi... - gi\|218889072\|ref\|YP_002437936.1\| threonine dehydratase [Pseudomonas aeruginosa LESB58], gi\|218769295... gi\|11352637 - pir\|\|F83603 threonine dehydratase, biosynthetic PA0331 [imported] - Pseudomonas aeruginosa (strain P... gi\|254237434, gi... - gi\|84318487\|ref\|ZP_00966910.1\| COG1171: Threonine dehydratase [Pseudomonas aeruginosa C3719], gi\|254... gi\|254243429, gi... - gi\|84324414\|ref\|ZP_00972472.1\| COG1171: Threonine dehydratase [Pseudomonas aeruginosa 2192], gi\|2542... gi\|15595528, gi\|... - gi\|9946179\|gb\|AAG03720.1\|AE004471_3 threonine dehydratase, biosynthetic [Pseudomonas aeruginosa PAO1... gi\|107099314 - gi\|107099314\|ref\|ZP_01363232.1\| hypothetical protein PaerPA_01000326 [Pseudomonas aeruginosa PACS2]	2.0E-97	[1..419]	[1..409]
gi\|116054058, gi... - gi\|53727080\|ref\|ZP_00140763.2\| COG1171: Threonine dehydratase [Pseudomonas aeruginosa UCBPP-PA14], g...	2.0E-97	[1..419]	[1..409]
gi\|56477351, gi\|... - gi\|56477351\|ref\|YP_158940.1\| threonine dehydratase [Aromatoleum aromaticum EbN1], gi\|56313394\|emb\|CA...	2.0E-96	[19..419]	[15..411]
gi\|134140090, gi... - gi\|67547191\|ref\|ZP_00425097.1\| Threonine dehydratase I [Burkholderia vietnamiensis G4], gi\|67531510\|...	3.0E-96	[17..419]	[11..412]
gi\|17427459 - gi\|17427459\|emb\|CAD13977.1\| probable threonine amonia-lyase (threonine dehydratase, threonine deamin... gi\|17545168 - gi\|17545168\|ref\|NP_518570.1\| threonine dehydratase [Ralstonia solanacearum GMI1000]	3.0E-96	[17..419]	[10..412]
gi\|7473973 - pir\|\|E75502 threonine ammonia-lyase (EC 4.3.1.19) DR0567 [similarity] - Deinococcus radiodurans (str... gi\|6458263, gi\|1... - gi\|6458263\|gb\|AAF10147.1\|AE001915_1 threonine dehydratase, biosynthetic [Deinococcus radiodurans R1]...	7.0E-96	[16..419]	[74..473]

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Predicted Domain #1

Region A:
Residues: [1-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQKVKERVK IEDILMAHTC MKDIVIKTPL QRDTVLSEKY DCDVYVKRED LQLIRSFKIR  60
   61 GAYNLIRSLS KEQLQNGVVC ASAGNHAQGV AYTCNLLKIP SKIFMPTTTP KQKVSQVQFF 120
  121 GGDFAEIVLV GDTFDSSFQE AQRYCEENRM TFVHPFDDPY VVAGQGTVAV EIMHDMEKPV 180
  181 DYIFTAIGGG GLASGVGTYV KGVSPATQVI GVEPMGAASM KEAFLQNDNV ALEKIDSFVD 240
  241 GAAVKKVGKL TFETCKDVID DIVLVPEGKV CTTILELYKK NAIVAEPAGA LSIAALDLYR 300
  301 DEIKGKTVVC TLSGGNNDID RMQEMKERSL IYEGLKHYFI IEFPQRSGAL REFLDKGLGP 360
  361 EDDITRFEYI KKHNKENGPA LVGVELKHKE DYEQLIIRFK ENNIQFMELN KNPVLFDLLI 420
  421

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.045757
Match:	1tdjA
Description:	THREONINE DEAMINASE (BIOSYNTHETIC) FROM E. COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acetolactate synthase activity	6.25735158730374	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	5.28856942236052	bayes_pls_golite062009
threonine racemase activity	4.44340924206787	bayes_pls_golite062009
threonine synthase activity	3.59927532963055	bayes_pls_golite062009
cysteine synthase activity	3.57860549303214	bayes_pls_golite062009
L-threonine ammonia-lyase activity	3.33109959091277	bayes_pls_golite062009
tryptophan synthase activity	1.99526226543975	bayes_pls_golite062009
lyase activity	1.87743897464083	bayes_pls_golite062009
binding	0.938511726811907	bayes_pls_golite062009
carbon-oxygen lyase activity	0.923824749425553	bayes_pls_golite062009
catalytic activity	0.645256181736122	bayes_pls_golite062009
ammonia-lyase activity	0.476674617721478	bayes_pls_golite062009
protein binding	0.341967829237094	bayes_pls_golite062009
carbon-nitrogen lyase activity	0.249761226675912	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: