YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261629, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261629, gi|....

Description	E-value	Query Range	Subject Range
gi\|228617054, gi... - gi\|229166480\|ref\|ZP_04294236.1\| Methylglyoxal synthase [Bacillus cereus AH621], gi\|228617054\|gb\|EEK7... gi\|228651148, gi... - gi\|229132442\|ref\|ZP_04261296.1\| Methylglyoxal synthase [Bacillus cereus BDRD-ST196], gi\|228651148\|gb... MGSA_BACWK - Methylglyoxal synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=mgsA PE=3 SV=1 gi\|229016890, gi... - gi\|229016890\|ref\|ZP_04173818.1\| Methylglyoxal synthase [Bacillus cereus AH1273], gi\|228744451\|gb\|EEL... gi\|228750343, gi... - gi\|229010943\|ref\|ZP_04168139.1\| Methylglyoxal synthase [Bacillus mycoides DSM 2048], gi\|228750343\|gb... gi\|229058270, gi... - gi\|229058270\|ref\|ZP_04196657.1\| Methylglyoxal synthase [Bacillus cereus AH603], gi\|228720041\|gb\|EEL7... gi\|228738242, gi... - gi\|229023096\|ref\|ZP_04179610.1\| Methylglyoxal synthase [Bacillus cereus AH1272], gi\|228738242\|gb\|EEL...	1.0E-60	[1..131]	[1..131]
MGSA_BACC3 - Methylglyoxal synthase OS=Bacillus cereus (strain 03BB102) GN=mgsA PE=3 SV=1 MGSA_BACHK - Methylglyoxal synthase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=mgsA PE=3 SV=1 gi\|228814467, gi... - gi\|228945232\|ref\|ZP_04107588.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar monterrey BGS... MGSA_BACCZ - Methylglyoxal synthase OS=Bacillus cereus (strain ZK / E33L) GN=mgsA PE=3 SV=1 gi\|228692738, gi... - gi\|229090595\|ref\|ZP_04221829.1\| Methylglyoxal synthase [Bacillus cereus Rock3-42], gi\|228692738\|gb\|E... gi\|228926663, gi... - gi\|228926663\|ref\|ZP_04089732.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar pondicheriens... MGSA_BACHK - Methylglyoxal synthase OS=Bacillus thuringiensis subsp. konkukian GN=mgsA PE=3 SV=1 gi\|228826724, gi... - gi\|228932921\|ref\|ZP_04095786.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar andalousiensi... gi\|229195834, gi... - gi\|229195834\|ref\|ZP_04322593.1\| Methylglyoxal synthase [Bacillus cereus m1293], gi\|228587607\|gb\|EEK4... MGSA_BACAH - Methylglyoxal synthase OS=Bacillus thuringiensis (strain Al Hakam) GN=mgsA PE=3 SV=1 MGSA_BACC0 - Methylglyoxal synthase OS=Bacillus cereus (strain AH820) GN=mgsA PE=3 SV=1 gi\|229121175, gi... - gi\|229121175\|ref\|ZP_04250412.1\| Methylglyoxal synthase [Bacillus cereus 95/8201], gi\|228662294\|gb\|EE... gi\|228599676, gi... - gi\|229183827\|ref\|ZP_04311044.1\| Methylglyoxal synthase [Bacillus cereus BGSC 6E1], gi\|228599676\|gb\|E... gi\|196033385, gi... - gi\|196033385\|ref\|ZP_03100797.1\| methylglyoxal synthase [Bacillus cereus W], gi\|195993819\|gb\|EDX57775... gi\|196022551, gi... - gi\|196046618\|ref\|ZP_03113842.1\| methylglyoxal synthase [Bacillus cereus 03BB108], gi\|196022551\|gb\|ED... gi\|196030282, gi... - gi\|196039137\|ref\|ZP_03106444.1\| methylglyoxal synthase [Bacillus cereus NVH0597-99], gi\|196030282\|gb...	2.0E-60	[1..131]	[1..131]
MGSA_BACC7 - Methylglyoxal synthase OS=Bacillus cereus (strain AH187) GN=mgsA PE=3 SV=1 MGSA_BACC4 - Methylglyoxal synthase OS=Bacillus cereus (strain B4264) GN=mgsA PE=3 SV=1 gi\|206970544, gi... - gi\|206970544\|ref\|ZP_03231496.1\| methylglyoxal synthase [Bacillus cereus AH1134], gi\|206734180\|gb\|EDZ... gi\|206974915, gi... - gi\|206974915\|ref\|ZP_03235830.1\| methylglyoxal synthase [Bacillus cereus H3081.97], gi\|206746934\|gb\|E... gi\|47565996, gi\|... - gi\|47565996\|ref\|ZP_00237034.1\| methylglyoxal synthase [Bacillus cereus G9241], gi\|47556913\|gb\|EAL152... MGSA_BACC1 - Methylglyoxal synthase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=mgsA PE=3 SV=1 MGSA_BACC2 - Methylglyoxal synthase OS=Bacillus cereus (strain G9842) GN=mgsA PE=3 SV=1 MGSA_BACCQ - Methylglyoxal synthase OS=Bacillus cereus (strain Q1) GN=mgsA PE=3 SV=1 gi\|228920344, gi... - gi\|228920344\|ref\|ZP_04083690.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar huazhongensis... gi\|228900213, gi... - gi\|228900213\|ref\|ZP_04064444.1\| Methylglyoxal synthase [Bacillus thuringiensis IBL 4222], gi\|2288593... gi\|228807544, gi... - gi\|228952012\|ref\|ZP_04114107.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar kurstaki str.... gi\|228938744, gi... - gi\|228938744\|ref\|ZP_04101347.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar berliner ATCC... gi\|228964607, gi... - gi\|228964607\|ref\|ZP_04125715.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar sotto str. T0... gi\|228801824, gi... - gi\|228957908\|ref\|ZP_04119648.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar pakistani str... gi\|228781252, gi... - gi\|228978235\|ref\|ZP_04138612.1\| Methylglyoxal synthase [Bacillus thuringiensis Bt407], gi\|228781252\|... gi\|228971626, gi... - gi\|228971626\|ref\|ZP_04132248.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar thuringiensis... gi\|228713937, gi... - gi\|229069185\|ref\|ZP_04202476.1\| Methylglyoxal synthase [Bacillus cereus F65185], gi\|228713937\|gb\|EEL... gi\|228984712, gi... - gi\|228984712\|ref\|ZP_04144884.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar tochigiensis ... gi\|229109088, gi... - gi\|229109088\|ref\|ZP_04238688.1\| Methylglyoxal synthase [Bacillus cereus Rock1-15], gi\|228674366\|gb\|E... gi\|228704497, gi... - gi\|229078815\|ref\|ZP_04211368.1\| Methylglyoxal synthase [Bacillus cereus Rock4-2], gi\|228704497\|gb\|EE... gi\|228639239, gi... - gi\|229144231\|ref\|ZP_04272645.1\| Methylglyoxal synthase [Bacillus cereus BDRD-ST24], gi\|228639239\|gb\|... gi\|229138327, gi... - gi\|229138327\|ref\|ZP_04266921.1\| Methylglyoxal synthase [Bacillus cereus BDRD-ST26], gi\|228645092\|gb\|... gi\|228628325, gi... - gi\|229155198\|ref\|ZP_04283310.1\| Methylglyoxal synthase [Bacillus cereus ATCC 4342], gi\|228628325\|gb\|... gi\|229149830, gi... - gi\|229149830\|ref\|ZP_04278058.1\| Methylglyoxal synthase [Bacillus cereus m1550], gi\|228633511\|gb\|EEK9... gi\|229189714, gi... - gi\|229189714\|ref\|ZP_04316728.1\| Methylglyoxal synthase [Bacillus cereus ATCC 10876], gi\|228593763\|gb... gi\|229178040, gi... - gi\|229178040\|ref\|ZP_04305412.1\| Methylglyoxal synthase [Bacillus cereus 172560W], gi\|228605528\|gb\|EE...	4.0E-60	[1..131]	[1..131]
gi\|228656546, gi... - gi\|229126946\|ref\|ZP_04255957.1\| Methylglyoxal synthase [Bacillus cereus BDRD-Cer4], gi\|228656546\|gb\|... MGSA_BACCR - Methylglyoxal synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIM...	6.0E-60	[1..131]	[1..131]
MGSA_CALBD - Methylglyoxal synthase OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=... MGSA_CALS8 - Methylglyoxal synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T ...	6.0E-60	[1..130]	[1..130]
MGSA_OCEIH - Methylglyoxal synthase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE83... MGSA_OCEIH - Methylglyoxal synthase OS=Oceanobacillus iheyensis GN=mgsA PE=3 SV=1	3.0E-59	[1..131]	[1..131]
MGSA_BACCN - Methylglyoxal synthase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98)...	3.0E-59	[1..131]	[1..131]
MGSA_GEOKA - Methylglyoxal synthase OS=Geobacillus kaustophilus (strain HTA426) GN=mgsA PE=3 SV=1 MGSA_GEOKA - Methylglyoxal synthase OS=Geobacillus kaustophilus GN=mgsA PE=3 SV=1	1.0E-58	[1..131]	[1..131]
gi\|89085453, gi\|... - gi\|89099895\|ref\|ZP_01172767.1\| methylglyoxal synthase [Bacillus sp. NRRL B-14911], gi\|89085453\|gb\|EA...	1.0E-58	[1..131]	[2..132]
MGSA_LISIN - Methylglyoxal synthase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=mgsA PE=3 SV=1 MGSA_LISIN - Methylglyoxal synthase OS=Listeria innocua GN=mgsA PE=3 SV=1	2.0E-58	[1..131]	[1..131]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIALIAHDK KKEDMVSFAY AYKPIFEQHE LFATGTTGLR IMEATGLVVT RYQSGPLGGD  60
   61 QEIGAMIAKN DLDMVIFFRD PLTAQPHEPD VNALLRLCDV YAIPLATNMA SAEMLMHALE 120
  121 RGDLDYRKLR K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.39794
Match:	1b93A
Description:	Methylglyoxal synthase, MgsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylglyoxal synthase activity	7.67158041469211	bayes_pls_golite062009
catalytic activity	2.05174935916901	bayes_pls_golite062009
carbon-oxygen lyase activity	0.8193600732138	bayes_pls_golite062009
carbon-oxygen lyase activity, acting on phosphates	0.74427062677768	bayes_pls_golite062009
lyase activity	0.129701662862796	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: