YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261628, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261628, gi|....

Description	E-value	Query Range	Subject Range
DAPB_GEOKA - 4-hydroxy-tetrahydrodipicolinate reductase OS=Geobacillus kaustophilus (strain HTA426) GN=dapB PE=3 ... DAPB_GEOKA - Dihydrodipicolinate reductase OS=Geobacillus kaustophilus GN=dapB PE=3 SV=1	1.0E-65	[1..266]	[1..265]
DAPB_LISMF - 4-hydroxy-tetrahydrodipicolinate reductase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=d... gi\|47017791, gi\|... - gi\|47093824\|ref\|ZP_00231569.1\| dihydrodipicolinate reductase [Listeria monocytogenes str. 4b H7858],... gi\|153167747, gi... - gi\|153167747\|ref\|ZP_01927851.1\| dihydrodipicolinate reductase [Listeria monocytogenes FSL N1-017], g... gi\|254877975 - gi\|254877975\|ref\|ZP_05250685.1\| dihydrodipicolinate reductase [Listeria monocytogenes FSL J2-071] gi\|254825598 - gi\|254825598\|ref\|ZP_05230599.1\| dihydrodipicolinate reductase [Listeria monocytogenes FSL J1-194] gi\|255520921 - gi\|255520921\|ref\|ZP_05388158.1\| dihydrodipicolinate reductase [Listeria monocytogenes FSL J1-175]	3.0E-65	[4..266]	[1..263]
DAPB_LISIN - Dihydrodipicolinate reductase OS=Listeria innocua GN=dapB PE=3 SV=1 DAPB_LISIN - 4-hydroxy-tetrahydrodipicolinate reductase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=dap...	7.0E-65	[4..266]	[1..263]
gi\|227553357, gi... - gi\|227553357\|ref\|ZP_03983406.1\| dihydrodipicolinate reductase [Enterococcus faecalis HH22], gi\|22717... gi\|229545828, gi... - gi\|229545828\|ref\|ZP_04434553.1\| dihydrodipicolinate reductase [Enterococcus faecalis TX1332], gi\|229... DAPB_ENTFA - Dihydrodipicolinate reductase OS=Enterococcus faecalis GN=dapB PE=3 SV=1 gi\|227073800, gi... - gi\|227518747\|ref\|ZP_03948796.1\| dihydrodipicolinate reductase [Enterococcus faecalis TX0104], gi\|227... gi\|229304933, gi... - gi\|229550020\|ref\|ZP_04438745.1\| dihydrodipicolinate reductase [Enterococcus faecalis ATCC 29200], gi... DAPB_ENTFA - 4-hydroxy-tetrahydrodipicolinate reductase OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=d...	1.0E-64	[3..265]	[1..259]
gi\|254936792 - gi\|254936792\|ref\|ZP_05268489.1\| dihydrodipicolinate reductase [Listeria monocytogenes F6900] gi\|254912465 - gi\|254912465\|ref\|ZP_05262477.1\| dihydrodipicolinate reductase [Listeria monocytogenes J2818] DAPB_LISMO - Dihydrodipicolinate reductase OS=Listeria monocytogenes GN=dapB PE=3 SV=1 gi\|224501294 - gi\|224501294\|ref\|ZP_03669601.1\| dihydrodipicolinate reductase [Listeria monocytogenes FSL R2-561] gi\|47096490, gi\|... - gi\|47096490\|ref\|ZP_00234082.1\| dihydrodipicolinate reductase [Listeria monocytogenes str. 1/2a F6854... DAPB_LISMO - 4-hydroxy-tetrahydrodipicolinate reductase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-6... gi\|126943685, gi... - gi\|254899396\|ref\|ZP_05259320.1\| dihydrodipicolinate reductase [Listeria monocytogenes J0161], gi\|153...	1.0E-64	[4..266]	[1..263]
DAPB_BACHD - Dihydrodipicolinate reductase OS=Bacillus halodurans GN=dapB PE=3 SV=1 DAPB_BACHD - 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 /...	2.0E-64	[3..266]	[1..264]
DAPB_BACAH - 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus thuringiensis (strain Al Hakam) GN=dapB PE=3 ... gi\|229121174, gi... - gi\|229121174\|ref\|ZP_04250411.1\| Dihydrodipicolinate reductase [Bacillus cereus 95/8201], gi\|22866229... gi\|229183826, gi... - gi\|229183826\|ref\|ZP_04311043.1\| Dihydrodipicolinate reductase [Bacillus cereus BGSC 6E1], gi\|2285996... gi\|196030078, gi... - gi\|196038933\|ref\|ZP_03106240.1\| dihydrodipicolinate reductase [Bacillus cereus NVH0597-99], gi\|19603... DAPB_BACC3 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus cereus (strain 03BB102) GN=dapB PE=3 SV=1 gi\|195993914, gi... - gi\|196033480\|ref\|ZP_03100892.1\| dihydrodipicolinate reductase [Bacillus cereus W], gi\|195993914\|gb\|E... gi\|228692737, gi... - gi\|229090594\|ref\|ZP_04221828.1\| Dihydrodipicolinate reductase [Bacillus cereus Rock3-42], gi\|2286927... DAPB_BACHK - Dihydrodipicolinate reductase OS=Bacillus thuringiensis subsp. konkukian GN=dapB PE=3 SV=1 DAPB_BACC0 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus cereus (strain AH820) GN=dapB PE=3 SV=1 gi\|196046581, gi... - gi\|196046581\|ref\|ZP_03113805.1\| dihydrodipicolinate reductase [Bacillus cereus 03BB108], gi\|19602251... DAPB_BACHK - 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27)...	3.0E-64	[1..266]	[1..266]
DAPB_BACCZ - 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus cereus (strain ZK / E33L) GN=dapB PE=3 SV=1	3.0E-64	[1..266]	[1..266]
gi\|47565995, gi\|... - gi\|47565995\|ref\|ZP_00237033.1\| dihydrodipicolinate reductase [Bacillus cereus G9241], gi\|47556912\|gb...	4.0E-64	[1..266]	[1..266]
DAPB_BACC1 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=dapB ...	5.0E-64	[1..266]	[1..266]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEMKVIIAG PRGRMGHEAV LLMERTEHFN LVAAVDYKHG GEKISDLPGM PALDATIYAD  60
   61 LHTCLEEVEA DVLLDLTTPE VGKQHVTLAV ERGLRSVIGT TGFTEEELKQ LTETAKEKAV 120
  121 GTIIAPNFAI GAVLMMKFSQ MAAKYFQDVE VIELHHDQKL DAPSGTAVKT VELIRQNRES 180
  181 KQQGHPNEVE QLEGARGANV DGIHIHSVRL PGLIAHQEVM FGGDGQMLTV RHDSFNRASF 240
  241 MSGVKLSIET VMNLDHLVYG LENIID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.154902
Match:	1c3vA
Description:	DIHYDRODIPICOLINATE REDUCTASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADPH AND PDC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.60548927745815	bayes_pls_golite062009
catalytic activity	2.54843319568228	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	1.54909195188343	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	0.841370849960815	bayes_pls_golite062009
saccharopine dehydrogenase activity	0.495113665163626	bayes_pls_golite062009
N-acetyl-gamma-glutamyl-phosphate reductase activity	0.0651785123513661	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: