YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261590, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	324 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261590, gi|....

Description	E-value	Query Range	Subject Range
gi\|49481036, gi\|... - gi\|49481036\|ref\|YP_035712.1\| L-asparaginase [Bacillus thuringiensis serovar konkukian str. 97-27], g... gi\|228914169, gi... - gi\|228914169\|ref\|ZP_04077787.1\| L-asparaginase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]... gi\|225786273, gi... - gi\|225863459\|ref\|YP_002748837.1\| asparaginase [Bacillus cereus 03BB102], gi\|225786273\|gb\|ACO26490.1\|... gi\|118477050, gi... - gi\|118477050\|ref\|YP_894201.1\| asparaginase [Bacillus thuringiensis str. Al Hakam], gi\|118416275\|gb\|A... gi\|228599639, gi... - gi\|229183790\|ref\|ZP_04311007.1\| L-asparaginase [Bacillus cereus BGSC 6E1], gi\|228599639\|gb\|EEK57242.... gi\|229090557, gi... - gi\|229090557\|ref\|ZP_04221792.1\| L-asparaginase [Bacillus cereus Rock3-42], gi\|228692760\|gb\|EEL46484.... gi\|228926626, gi... - gi\|228926626\|ref\|ZP_04089695.1\| L-asparaginase [Bacillus thuringiensis serovar pondicheriensis BGSC ... gi\|51977320, gi\|... - gi\|52143851\|ref\|YP_082976.1\| L-asparaginase [Bacillus cereus E33L], gi\|51977320\|gb\|AAU18870.1\| L-asp...	0.0	[1..324]	[1..324]
gi\|30019644, gi\|... - gi\|30019644\|ref\|NP_831275.1\| L-asparaginase [Bacillus cereus ATCC 14579], gi\|29895188\|gb\|AAP08476.1\|...	0.0	[1..324]	[1..324]
gi\|228651107, gi... - gi\|229132401\|ref\|ZP_04261255.1\| L-asparaginase [Bacillus cereus BDRD-ST196], gi\|228651107\|gb\|EEL0708... gi\|89152709, gi\|... - gi\|89209360\|ref\|ZP_01187790.1\| Asparaginase [Bacillus weihenstephanensis KBAB4], gi\|89152709\|gb\|EAR7...	0.0	[1..324]	[1..324]
gi\|74488413, gi\|... - gi\|75764099\|ref\|ZP_00743692.1\| L-asparaginase [Bacillus thuringiensis serovar israelensis ATCC 35646... gi\|228852447, gi... - gi\|228907226\|ref\|ZP_04071087.1\| L-asparaginase [Bacillus thuringiensis IBL 200], gi\|228852447\|gb\|EEM...	0.0	[1..324]	[1..324]
gi\|25290108 - pir\|\|H83852 L-asparaginase BH1624 [imported] - Bacillus halodurans (strain C-125) gi\|10174241, gi\|... - gi\|15614187\|ref\|NP_242490.1\| L-asparaginase [Bacillus halodurans C-125], gi\|10174241\|dbj\|BAB05343.1\|...	0.0	[1..321]	[1..320]
gi\|20515971, gi\|... - gi\|20807447\|ref\|NP_622618.1\| L-asparaginase/ Glu-tRNAGln amidotransferase subunit D [Thermoanaerobac... gi\|20807447 - gi\|20807447\|ref\|NP_622618.1\| L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Thermoa...	0.0	[1..324]	[1..325]
gi\|25290111 - pir\|\|E97111 L-asparaginase [imported] - Clostridium acetobutylicum gi\|15894991, gi\|... - gi\|15894991\|ref\|NP_348340.1\| L-asparaginase [Clostridium acetobutylicum ATCC 824], gi\|15024680\|gb\|AA...	0.0	[1..324]	[1..325]
gi\|28900229, gi\|... - gi\|28900229\|ref\|NP_799884.1\| L-asparaginase II [Vibrio parahaemolyticus RIMD 2210633], gi\|28808540\|d... gi\|28808540 - gi\|28808540\|dbj\|BAC61717.1\| periplasmic L-asparaginase II [Vibrio parahaemolyticus RIMD 2210633]	0.0	[1..323]	[27..353]
gi\|114845352, gi... - gi\|167039978\|ref\|YP_001662963.1\| asparaginase/glutaminase [Thermoanaerobacter sp. X514], gi\|16685421... gi\|242257143, gi... - gi\|242257143\|ref\|ZP_04802017.1\| Asparaginase/glutaminase [Thermoanaerobacter sp. X513], gi\|242231320...	0.0	[1..324]	[24..347]
gi\|76797154, gi\|... - gi\|76797154\|ref\|ZP_00779492.1\| Asparaginase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76587480... gi\|241883454, gi... - gi\|241904167\|ref\|ZP_04788874.1\| Asparaginase/glutaminase [Thermoanaerobacter brockii subsp. finnii A...	0.0	[1..324]	[24..347]

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Predicted Domain #1

Region A:
Residues: [1-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRILVLHTG GTIAMEEDKE TGVVQPGEKN PLLKFIPDLE GDVDLIVEDV FHLPSPHMTP  60
   61 SEMLQLQVII DERVKQDNIH GVVITHGTDT LEETAYFLDL TVQATIPIVV TGAMRSSNEL 120
  121 GADGLYNFLS AVKVASSSEA AEKGVLVVLN DEIHCATNVT KTHTSNVATF QSPQYGPIGM 180
  181 VTKRGVVFHH ALVHHETYSV NKVSKNVVVL KAYAGMDDTL LAAIENLPVD GIVIEALGQG 240
  241 NLPPRTLPSL ERLINKGIPV VLVSRCFNGI VQDVYSYEGG GKQLKDMGIV FTYGLNAQKA 300
  301 RIKLLVALEN TTSHEAIQNM FMHD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	1zq1A
Description:	Structure of GatDE tRNA-Dependent Amidotransferase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
asparaginase activity	5.31552786314061	bayes_pls_golite062009
hydrolase activity	4.24082880889802	bayes_pls_golite062009
catalytic activity	1.35076351157997	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.739997194025722	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	0.584091474722373	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: