YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255326, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	389 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255326, gi|....

Description	E-value	Query Range	Subject Range
gi\|52784860, gi\|... - gi\|52784860\|ref\|YP_090689.1\| YhaA [Bacillus licheniformis ATCC 14580], gi\|52347362\|gb\|AAU39996.1\| Yh...	6.0E-86	[3..388]	[10..395]
gi\|86609415 - gi\|86609415\|ref\|YP_478177.1\| peptidase, M20D family [Cyanobacteria bacterium Yellowstone B-Prime] gi\|86609415, gi\|... - gi\|86609415\|ref\|YP_478177.1\| M20D family peptidase [Synechococcus sp. JA-2-3B'a(2-13)], gi\|86557957\|...	2.0E-84	[3..386]	[6..390]
gi\|86607134, gi\|... - gi\|86607134\|ref\|YP_475897.1\| M20D family peptidase [Synechococcus sp. JA-3-3Ab], gi\|86555676\|gb\|ABD0... gi\|86607134 - gi\|86607134\|ref\|YP_475897.1\| peptidase, M20D family [Cyanobacteria bacterium Yellowstone A-Prime]	3.0E-83	[3..386]	[6..390]
gi\|89100416, gi\|... - gi\|89100416\|ref\|ZP_01173279.1\| YhaA [Bacillus sp. NRRL B-14911], gi\|89084845\|gb\|EAR63983.1\| YhaA [Ba...	7.0E-83	[2..386]	[32..416]
gi\|186682684, gi... - gi\|23125115\|ref\|ZP_00107063.1\| COG1473: Metal-dependent amidase/aminoacylase/carboxypeptidase [Nosto...	7.0E-83	[6..386]	[19..403]
gi\|17134072, gi\|... - gi\|17232426\|ref\|NP_488974.1\| N-acyl-L-amino acid amidohydrolase [Nostoc sp. PCC 7120], gi\|17134072\|d... gi\|25319559 - pir\|\|AF2422 N-acyl-L-amino acid amidohydrolase [imported] - Nostoc sp. (strain PCC 7120)	2.0E-82	[6..386]	[19..402]
gi\|71674565, gi\|... - gi\|71674565\|ref\|ZP_00672312.1\| Peptidase M20D, amidohydrolase [Trichodesmium erythraeum IMS101], gi\|...	2.0E-82	[3..386]	[16..401]
gi\|67921253, gi\|... - gi\|67921253\|ref\|ZP_00514772.1\| Peptidase M20D, amidohydrolase [Crocosphaera watsonii WH 8501], gi\|67...	5.0E-82	[6..387]	[19..402]
gi\|163860826, gi... - gi\|89207979\|ref\|ZP_01186505.1\| Peptidase M20D, amidohydrolase [Bacillus weihenstephanensis KBAB4], g...	7.0E-82	[1..387]	[1..387]
gi\|56963620, gi\|... - gi\|56963620\|ref\|YP_175351.1\| N-acyl-L-amino acid amidohydrolase [Bacillus clausii KSM-K16], gi\|56909...	1.0E-81	[2..387]	[4..389]

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Predicted Domain #1

Region A:
Residues: [1-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRVWKSLIA EENIVKWRRH FHKYPELSFH EKETSQFIYD TLCTFSSFEV TRPTKYSVLA  60
   61 IKRGTEQGKV VAIRADIDAL PIQEETSKSY TSVNKGIMHA CGHDAHAAIL LSTAEVLSNI 120
  121 KEDFAGEIRL FFQHAEEVYP GGGQEMVEAG VMDGVDYVIG LHVMSGLESG KIGIAYGPMM 180
  181 AAPDVFTVEI QGKGGHAARP EETIDPIAIG AQIITNLQHI VSRNTSAFMQ RVVSVTQFHG 240
  241 GMADNIIPSV ATLMGTVRSF NQVLRVEAEE KIEKIVKGIT KAHGGAYTYT YRYGYNPVIN 300
  301 DEYITKVVEE SAIHLFGNER VVKLEPSMGG EDFSAYLRKA PGCFIKLGTG NEKINTCYPH 360
  361 HHPKFDVDES ALINGVELFL ETAIRLLKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.30103
Match:	1ysjA
Description:	Crystal Structure of Bacillus Subtilis YXEP Protein (APC1829), a Dinuclear Metal Binding Peptidase from M20 Family
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	3.0609849976664	bayes_pls_golite062009
peptidase activity	3.04706302825019	bayes_pls_golite062009
catalytic activity	2.3710874246093	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.30644893326426	bayes_pls_golite062009
exopeptidase activity	1.25673143627992	bayes_pls_golite062009
carboxypeptidase activity	0.76593160329727	bayes_pls_golite062009
succinyl-diaminopimelate desuccinylase activity	0.0189053170666407	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: