YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49184263, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	542 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49184263, gi|....

Description	E-value	Query Range	Subject Range
gi\|89157505, gi\|... - gi\|89204444\|ref\|ZP_01183021.1\| S-layer-like region:Leucine-rich repeat:NEAr transporter [Bacillus we...	1.0E-89	[1..542]	[225..766]
gi\|42780518, gi\|... - gi\|42780518\|ref\|NP_977765.1\| internalin, putative [Bacillus cereus ATCC 10987], gi\|42736438\|gb\|AAS40...	1.0E-86	[1..542]	[220..755]
gi\|52144007, gi\|... - gi\|52144007\|ref\|YP_082821.1\| internalin [Bacillus cereus E33L], gi\|51977476\|gb\|AAU19026.1\| internali...	3.0E-86	[1..542]	[231..772]
gi\|49480077, gi\|... - gi\|49480077\|ref\|YP_035555.1\| internalin [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|49...	4.0E-86	[1..542]	[230..765]
gi\|47566217, gi\|... - gi\|47566217\|ref\|ZP_00237245.1\| Rab family protein [Bacillus cereus G9241], gi\|47556770\|gb\|EAL15101.1...	6.0E-86	[1..542]	[220..755]
gi\|29895026, gi\|... - gi\|30019482\|ref\|NP_831113.1\| internalin [Bacillus cereus ATCC 14579], gi\|29895026\|gb\|AAP08314.1\| Int...	1.0E-85	[1..542]	[225..760]
gi\|74493163, gi\|... - gi\|75759331\|ref\|ZP_00739428.1\| Internalin protein [Bacillus thuringiensis serovar israelensis ATCC 3... gi\|228900010, gi... - gi\|228900010\|ref\|ZP_04064246.1\| Internalin [Bacillus thuringiensis IBL 4222], gi\|228859624\|gb\|EEN040...	5.0E-85	[1..542]	[231..766]
gi\|21674346, gi\|... - gi\|21674346\|ref\|NP_662411.1\| Rab family protein [Chlorobium tepidum TLS], gi\|21647522\|gb\|AAM72753.1\|...	3.0E-58	[1..325]	[90..414]
gi\|12054727 - gi\|12054727\|emb\|CAC20606.1\| internalin B [Listeria ivanovii]	3.0E-56	[3..515]	[125..654]
gi\|34541475, gi\|... - gi\|34541475\|ref\|NP_905954.1\| leucine-rich protein [Porphyromonas gingivalis W83], gi\|34397792\|gb\|AAQ...	9.0E-55	[1..321]	[104..424]

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Predicted Domain #1

Region A:
Residues: [1-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLNTNEILD YSALKYMPNL KSLTVANAKI KDPSFFANLK QLNHLALRGN EFSDVTPLVK  60
   61 MDHLDSLDLS NNKITNVAPL IEMKNVKSLY LSGNQIEDVT ALAKMEQLDY LNLANNKITN 120
  121 VAPLSALKNV TYLTLAGNQI EDIKPLYSLP LTDLVLTRNK VKDLSGIEQM KQLEELWIGK 180
  181 NEIKDVTPLS KMTQLKQLHL PNNELKDITP LSSLVNLQKL DLEANYISDL TPASNLKKLV 240
  241 FLSFVANEIR DVRPVIELSK TAYINVQNQK VFLEETEVNK EVKVPIYEKD GKISTKIRLK 300
  301 GEGGTYSNDA VKWSTPGEKV YEFGVKDPFA DTGIFFTGSV IQNVVESKAD NTSKEDNTSK 360
  361 EDAKVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	2omuA
Description:	No description for 2omuA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.599328380025667	bayes_pls_golite062009
receptor activity	0.534098080799865	bayes_pls_golite062009
protein binding	0.414941881933838	bayes_pls_golite062009
transmembrane receptor activity	0.0356911083104122	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [367-542]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVEFKDVPKG HWSEEAIHYL AKENIFKGYG NGQFGFGDSI TRGQVASLVQ RYLKLENKVE  60
   61 QKERFTDTKG HMFEQDIATV AQAGIMQGDG TGEFRPDGVL TRYEMSVVLY KVFQLKEDGN 120
  121 NKVNFKDVPT GHWAEGYVKA LVDNNISKGD GKERFLGDDF VTREQYAQFL YNAITK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: