YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255178, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255178, gi|....

Description	E-value	Query Range	Subject Range
gi\|33637042 - gi\|33637042\|gb\|AAQ23680.1\| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus stearothermophilus]	2.0E-82	[1..181]	[1..181]
gi\|33413323, gi\|... - gi\|33413323\|emb\|CAD67948.1\| putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Thermotoga sp. RQ2], gi\|1...	1.0E-78	[1..181]	[1..181]
gi\|237704492, gi... - gi\|237704492\|ref\|ZP_04534973.1\| RmlC [Escherichia sp. 3_2_53FAA], gi\|226900858\|gb\|EEH87117.1\| RmlC [... gi\|115513358, gi... - gi\|117624234\|ref\|YP_853147.1\| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli APEC O...	2.0E-77	[1..180]	[1..181]
gi\|16357460 - gi\|16357460\|gb\|AAL18012.1\| dTDP-dehydrorhamnose 3,5-epimerase [Aneurinibacillus thermoaerophilus]	5.0E-77	[1..181]	[1..181]
gi\|187880659, gi... - gi\|187880668\|gb\|ACD37169.1\| RmlC [Escherichia coli], gi\|187880659\|gb\|ACD37161.1\| RmlC [Escherichia c... RMLC_SHIFL - dTDP-4-dehydrorhamnose 3,5-epimerase OS=Shigella flexneri GN=rfbC PE=3 SV=1 gi\|24113423, gi\|... - gi\|24113423\|ref\|NP_707933.1\| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 2a str. 301], g... gi\|110615555, gi... - gi\|110806007\|ref\|YP_689527.1\| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 5 str. 8401], ... gi\|30041742, gi\|... - gi\|30063489\|ref\|NP_837660.1\| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 2a str. 2457T],...	2.0E-76	[1..181]	[1..180]
gi\|67158229, gi\|... - gi\|67158229\|ref\|ZP_00419279.1\| dTDP-4-dehydrorhamnose 3,5-epimerase [Azotobacter vinelandii AvOP], r... gi\|67084963, gi\|... - gi\|67158229\|ref\|ZP_00419279.1\| dTDP-4-dehydrorhamnose 3,5-epimerase [Azotobacter vinelandii AvOP], g...	2.0E-76	[1..179]	[1..180]
gi\|46451854 - gi\|46451854\|gb\|AAS98029.1\| RmlC [Shigella boydii]	2.0E-76	[1..175]	[1..176]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVIETNFTD AKLLEPRLFG DDRGFFTESY NKKVLETLGV THSFVQDNVS YSAEAGTIRG  60
   61 LHFQKNPKAQ TKLIQVMQGA IYDVIVDLRK DSPTFKQWRG YILSADNHRQ LLVPKGFAHG 120
  121 FCTLVPHTIV MYKVDEYYSA DHDSGVLWND KELAIPWPVT SPILSDKDRI LPLLQECEDS 180
  181 F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.522879
Match:	1dzrA
Description:	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
dTDP-4-dehydrorhamnose 3,5-epimerase activity	2.99216880710047	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	0.79850768705664	bayes_pls_golite062009
catalytic activity	0.77242843392921	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.33927425209029	bayes_pls_golite062009
isomerase activity	0.02840080734269	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: