YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254619, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254619, gi|....

Description	E-value	Query Range	Subject Range
3MGH_BACCZ - Putative 3-methyladenine DNA glycosylase OS=Bacillus cereus (strain ZK / E33L) GN=BCE33L0774 PE=3 SV...	3.0E-83	[1..205]	[1..205]
gi\|47564817, gi\|... - gi\|47564817\|ref\|ZP_00235861.1\| DNA-3-methyladenine glycosylase [Bacillus cereus G9241], gi\|47558190\|... gi\|229154573, gi... - gi\|229154573\|ref\|ZP_04282690.1\| 3-methyladenine DNA glycosylase [Bacillus cereus ATCC 4342], gi\|2286...	6.0E-83	[1..205]	[1..205]
gi\|228594493, gi... - gi\|229189073\|ref\|ZP_04316101.1\| 3-methyladenine DNA glycosylase [Bacillus cereus ATCC 10876], gi\|228... gi\|229143588, gi... - gi\|229143588\|ref\|ZP_04272013.1\| 3-methyladenine DNA glycosylase [Bacillus cereus BDRD-ST24], gi\|2286... gi\|228606126, gi... - gi\|229177403\|ref\|ZP_04304786.1\| 3-methyladenine DNA glycosylase [Bacillus cereus 172560W], gi\|228606... 3MGH_BACCR - Putative 3-methyladenine DNA glycosylase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 /... gi\|229126295, gi... - gi\|229126295\|ref\|ZP_04255313.1\| 3-methyladenine DNA glycosylase [Bacillus cereus BDRD-Cer4], gi\|2286...	1.0E-82	[1..205]	[1..205]
3MGH_BACC1 - Putative 3-methyladenine DNA glycosylase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=BCE_095...	2.0E-82	[1..205]	[1..205]
3MGH_BACHK - Putative 3-methyladenine DNA glycosylase OS=Bacillus thuringiensis subsp. konkukian GN=BT9727_0773 P... 3MGH_BACHK - Putative 3-methyladenine DNA glycosylase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) G...	3.0E-82	[1..205]	[1..205]
gi\|228860132, gi... - gi\|228899542\|ref\|ZP_04063798.1\| 3-methyladenine DNA glycosylase [Bacillus thuringiensis IBL 4222], g... gi\|75759697, gi\|... - gi\|75759697\|ref\|ZP_00739779.1\| DNA-3-methyladenine glycosylase II [Bacillus thuringiensis serovar is...	6.0E-82	[1..205]	[1..205]
3MGH_BACWK - Putative 3-methyladenine DNA glycosylase OS=Bacillus weihenstephanensis (strain KBAB4) GN=BcerKBAB4_...	1.0E-81	[1..204]	[1..204]
3MGH_BACCN - Putative 3-methyladenine DNA glycosylase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 39...	6.0E-81	[1..204]	[1..204]
3MGH_CLOAB - Putative 3-methyladenine DNA glycosylase OS=Clostridium acetobutylicum GN=CA_C2969 PE=3 SV=1 3MGH_CLOAB - Putative 3-methyladenine DNA glycosylase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / ...	4.0E-77	[1..203]	[1..200]
3MGH_ALKOO - Putative 3-methyladenine DNA glycosylase OS=Alkaliphilus oremlandii (strain OhILAs) GN=Clos_1158 PE=...	5.0E-76	[1..205]	[1..202]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAPPSFYEG DTLEVAKKLL GQKLVHIVNG IKRSGIIVEV EAYKGPDDKA AHSYGGRRTD  60
   61 RTEVMFGAPG HAYVYLIYGM YHCFNVITAP VGTPQGVLIR ALEPVDGIEE IKLARYNKTD 120
  121 ITKAQYKNLT NGPGKLCRAL GITLEERGVS LQSDTLHIEL VPEEKHISSQ YKITAGPRIN 180
  181 IDYAEEAVHY PWRFYYEGHP FVSKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.522879
Match:	1f4rA
Description:	3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA N-glycosylase activity	2.82903690025185	bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds	2.47858881161269	bayes_pls_golite062009
alkylbase DNA N-glycosylase activity	1.38670970810513	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.31512600331117	bayes_pls_golite062009
catalytic activity	1.11092890710142	bayes_pls_golite062009
hydrolase activity	0.47210507650617	bayes_pls_golite062009
binding	0.0371188365761971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: