YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260932, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	646 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260932, gi|....

Description	E-value	Query Range	Subject Range
gi\|49331795, gi\|... - gi\|49480239\|ref\|YP_035044.1\| BigG family transcription antiterminator [Bacillus thuringiensis serova...	402.0	[0..1]	[646..1]
gi\|52144538, gi\|... - gi\|52144538\|ref\|YP_082290.1\| BigG family transcription antiterminator [Bacillus cereus E33L], gi\|519...	401.0	[0..1]	[646..1]
gi\|42779957, gi\|... - gi\|42779957\|ref\|NP_977204.1\| BigG family transcription antiterminator [Bacillus cereus ATCC 10987], ...	398.0	[0..4]	[646..1]
gi\|163860903, gi... - gi\|89208352\|ref\|ZP_01186863.1\| Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2... gi\|229131728, gi... - gi\|229131728\|ref\|ZP_04260605.1\| Transcription antiterminator, BglG [Bacillus cereus BDRD-ST196], gi\|...	397.0	[0..1]	[646..1]
gi\|47558096, gi\|... - gi\|47564723\|ref\|ZP_00235767.1\| transcription regulator, probable, putative [Bacillus cereus G9241], ...	390.0	[0..22]	[646..2]
gi\|228860223, gi... - gi\|228899466\|ref\|ZP_04063723.1\| Transcription antiterminator, BglG [Bacillus thuringiensis IBL 4222]... gi\|74490060, gi\|... - gi\|75762451\|ref\|ZP_00742317.1\| Transcription antiterminator, BglG family / PTS system, mannitol (Cry...	389.0	[0..1]	[643..1]
gi\|29894507, gi\|... - gi\|30018965\|ref\|NP_830596.1\| BigG family transcription antiterminator [Bacillus cereus ATCC 14579], ...	388.0	[0..4]	[643..1]
LICR_BACSU - Probable licABCH operon regulator OS=Bacillus subtilis (strain 168) GN=licR PE=1 SV=1 LICR_BACSU - Probable licABCH operon regulator OS=Bacillus subtilis GN=licR PE=1 SV=1 gi\|221321064 - gi\|221321064\|ref\|ZP_03602358.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH... gi\|221316153 - gi\|221316153\|ref\|ZP_03597958.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. NC... gi\|221325349 - gi\|221325349\|ref\|ZP_03606643.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. SM...	373.0	[0..3]	[643..1]
gi\|52787767, gi\|... - gi\|52787767\|ref\|YP_093596.1\| LicR [Bacillus licheniformis ATCC 14580], gi\|52350269\|gb\|AAU42903.1\| Li...	358.0	[0..3]	[645..1]
gi\|89086738, gi\|... - gi\|89098493\|ref\|ZP_01171376.1\| LicR [Bacillus sp. NRRL B-14911], gi\|89086738\|gb\|EAR65856.1\| LicR [Ba...	352.0	[0..3]	[643..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKVHQRLIS ILEEFLEEKS MLNRAFLASR LHVSTKTIQK DIKLLNDILE ENGAKIESQR  60
   61 GTGYELEIIQ TKKFEEFCVS LFQKQTEKIP TSYEERIAYI LQRILTTEGY VKLSQLAEEI 120
  121 YV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.04
Match:	1j5yA
Description:	Putative transcriptional regulator TM1602, N-terminal domain; Putative transcriptional regulator TM1602, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [123-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKSTVNLIMK DVTDICGRYQ LQIEKRPYYG IRIVGEEFHI RSCLSQYGLP RYDHTPFHEQ  60
   61 FEQSDTYVSL PHIPLIRSVI LKYIEGGTIY LSDIEIDNLV IHIAIALKRC EDQHYMKGLN 120
  121 EEQAELIIKK EYAIAKQIVG DLEKELHLSF PEEEVLYVTM HLLSTAVTSK DRYENVEELL 180
  181 GKDLYAFMQH ILFKVAEERN LVFYYDEELL FGFGVHLKTL LNRLKYKLNT RNPLLAEVKK 240
  241 NYPYAFEIAV LVGDIIGEYT GESIPESEIG YIAIHFGGAM SRLQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1tlvA
Description:	Structure of the native and inactive LicT PRD from B. subtilis
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [408-500]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNQKKRCLLV CATGQGSAQL LKYKILSQFR DKLEIVGITG YYQLKVEDLY KEKIDCIIST  60
   61 IHIPSGLPVP IIKVNSIFDD KEIKSIGQQL FTH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.42
Match:	1tvmA
Description:	NMR structure of enzyme GatB of the galactitol-specific phosphoenolpyruvate-dependent phosphotransferase system
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [501-646]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNNSVQQYMK EDLIFLNHSA STKEEVIQFL CEKAAEKNYV PEHFYDSVME RENTSPTAVG  60
   61 NLVAIPHPMQ LLSAETFLMF CTLEKAVDWG DKKVQVIILF SVKRNNNEDL QRLYDFLYDI 120
  121 MSSQSTIEKL THAEGIEDFQ EVLLSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1a3aA
Description:	Phosphotransferase IIa-mannitol
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits