YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260786, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	553 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260786, gi|....

Description	E-value	Query Range	Subject Range
gi\|56380123, gi\|... - gi\|56420281\|ref\|YP_147599.1\| alpha,alpha-phosphotrehalase [Geobacillus kaustophilus HTA426], gi\|5638...	0.0	[3..553]	[6..562]
gi\|75812283 - gi\|75812283\|dbj\|BAE45038.1\| trehalose-6-phosphate hydrolase [Geobacillus stearothermophilus]	0.0	[3..553]	[6..562]
gi\|8096681 - gi\|8096681\|gb\|AAF71997.1\|AF216220_1 alpha-glucosidase [Bacillus sp. DG0303]	0.0	[3..553]	[5..561]
gi\|89085557, gi\|... - gi\|89099810\|ref\|ZP_01172683.1\| alpha,alpha-phosphotrehalase [Bacillus sp. NRRL B-14911], gi\|89085557...	0.0	[3..553]	[22..578]
gi\|163938555, gi... - gi\|89206151\|ref\|ZP_01184713.1\| Alpha amylase, catalytic subdomain [Bacillus weihenstephanensis KBAB4...	0.0	[1..553]	[1..553]
gi\|52144679, gi\|... - gi\|52144679\|ref\|YP_082149.1\| alpha,alpha-phosphotrehalase (trehalose-6-phosphate hydrolase) [Bacillu...	0.0	[1..553]	[1..553]
gi\|42779778, gi\|... - gi\|42779778\|ref\|NP_977025.1\| trehalose-6-phosphate hydrolase [Bacillus cereus ATCC 10987], gi\|427356...	0.0	[1..553]	[1..553]
gi\|49331777, gi\|... - gi\|49480221\|ref\|YP_034890.1\| alpha,alpha-phosphotrehalase (trehalose-6-phosphate hydrolase) [Bacillu... gi\|228932059, gi... - gi\|228932059\|ref\|ZP_04094951.1\| Trehalose-6-phosphate hydrolase [Bacillus thuringiensis serovar anda...	0.0	[1..553]	[1..553]
gi\|75759404, gi\|... - gi\|75759404\|ref\|ZP_00739499.1\| Trehalose-6-phosphate hydrolase [Bacillus thuringiensis serovar israe...	0.0	[1..553]	[14..566]
gi\|47568078, gi\|... - gi\|47568078\|ref\|ZP_00238783.1\| trehalose-6-phosphate hydrolase [Bacillus cereus G9241], gi\|47555232\|...	0.0	[1..553]	[1..553]

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Predicted Domain #1

Region A:
Residues: [1-553]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDWHKSVVY QIYPKSFNSY YNKETGDIKG VTEKLDYLKE LGVDYIWLTP IYQSPQNDNG  60
   61 YDVSDYYSID PSYGTMEEFE ELLEEAKARN IEIMLDIVVN HSSTEHKWFK EAKKDKNSPY 120
  121 RNYYIWRDEK NNWQSKFGGS AWKYDEKTKQ YFLHLFDETQ ADLNWENEKL REEVYDMMRF 180
  181 WLDKGVTGFR LDVINLISKD QQFLNDDGST ATSDGRKYYT DGPRVHEYLQ EMNRNVFEGK 240
  241 DVLTVGEMSS TTIDNCIKYS NPDRNELSMT FSFHHLKVDY PNGDKWTKAD FDFIKLKEIM 300
  301 SNWQIEMQKG GGWNALFWCN HDQPRIVSRF GNDEKYRNES AKMLATAMHM LQGTPYIYQG 360
  361 EEIGMTNPNF ESIEQYRDVE SLNIYDIKLE EGLSKEEIIG ILKQKSRDNS RTPMQWNEDV 420
  421 NSGFTTSTPW ISVAENFKEI NVEKALEDKE SVFYYYKKLI ELRKTYDVIT EGEYAILDEN 480
  481 DSEIWAYTRT TESEVLLVIN NFYGEEITYS VPAHVQLDGM KQEVLLSNYK DSSKDIAKLN 540
  541 LRPYESIVYR YTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	123.0
Match:	1uokA
Description:	CRYSTAL STRUCTURE OF B. CEREUS OLIGO-1,6-GLUCOSIDASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, hydrolyzing O-glycosyl compounds	4.11319792356479	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	3.92012282533754	bayes_pls_golite062009
hydrolase activity	3.21770945631891	bayes_pls_golite062009
chitinase activity	2.45357334610104	bayes_pls_golite062009
structural molecule activity	2.28030619331997	bayes_pls_golite062009
trehalase activity	2.11042620996316	bayes_pls_golite062009
alpha-amylase activity	2.09193270404736	bayes_pls_golite062009
amylase activity	2.03484942782894	bayes_pls_golite062009
catalytic activity	1.85569074294201	bayes_pls_golite062009
alpha-glucosidase activity	0.96543619590958	bayes_pls_golite062009
glucosidase activity	0.766503513427695	bayes_pls_golite062009
hexosaminidase activity	0.763360027922833	bayes_pls_golite062009
binding	0.63693798355947	bayes_pls_golite062009
carbohydrate binding	0.4998423581103	bayes_pls_golite062009
maltase activity	0.442635030512661	bayes_pls_golite062009
sugar binding	0.36459095255871	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.266938437560648	bayes_pls_golite062009
beta-N-acetylhexosaminidase activity	0.263065978664289	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: