YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260784, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260784, gi|....

Description	E-value	Query Range	Subject Range
gi\|10173032, gi\|... - gi\|15612982\|ref\|NP_241285.1\| GntR family transcriptional regulator [Bacillus halodurans C-125], gi\|1... gi\|25298828 - pir\|\|C83702 transcription regulator (GntR family) BH0419 [imported] - Bacillus halodurans (strain C-...	6.0E-47	[2..235]	[8..240]
gi\|56380652, gi\|... - gi\|56420810\|ref\|YP_148128.1\| GntR family transcriptional regulator [Geobacillus kaustophilus HTA426]...	1.0E-45	[3..235]	[9..240]
gi\|89202896, gi\|... - gi\|89202896\|ref\|ZP_01181601.1\| regulatory protein GntR, HTH:UbiC transcription regulator-associated ...	4.0E-45	[3..235]	[10..241]
gi\|49478510, gi\|... - gi\|49478510\|ref\|YP_038113.1\| GntR family transcriptional regulator [Bacillus thuringiensis serovar k... gi\|52141439, gi\|... - gi\|52141439\|ref\|YP_085390.1\| GntR family transcriptional regulator [Bacillus cereus E33L], gi\|519749... gi\|47504713, gi\|... - gi\|47529565\|ref\|YP_020914.1\| GntR family transcriptional regulator [Bacillus anthracis str. 'Ames An... gi\|49186961, gi\|... - gi\|49186961\|ref\|YP_030213.1\| GntR family transcriptional regulator [Bacillus anthracis str. Sterne],... gi\|47565935, gi\|... - gi\|47565935\|ref\|ZP_00236974.1\| transcriptional regulator, GntR family [Bacillus cereus G9241], gi\|47... gi\|30258774, gi\|... - gi\|30264129\|ref\|NP_846506.1\| GntR family transcriptional regulator [Bacillus anthracis str. Ames], g... gi\|254721656 - gi\|254721656\|ref\|ZP_05183445.1\| GntR family transcriptional regulator [Bacillus anthracis str. A1055... gi\|254683821 - gi\|254683821\|ref\|ZP_05147681.1\| GntR family transcriptional regulator [Bacillus anthracis str. CNEVA... gi\|254744057 - gi\|254744057\|ref\|ZP_05201740.1\| GntR family transcriptional regulator [Bacillus anthracis str. Kruge... gi\|254736167 - gi\|254736167\|ref\|ZP_05193873.1\| GntR family transcriptional regulator [Bacillus anthracis str. Weste... gi\|254758146 - gi\|254758146\|ref\|ZP_05210173.1\| GntR family transcriptional regulator [Bacillus anthracis str. Austr... gi\|254754164 - gi\|254754164\|ref\|ZP_05206199.1\| GntR family transcriptional regulator [Bacillus anthracis str. Vollu...	8.0E-45	[3..235]	[10..241]
gi\|52082624, gi\|... - gi\|52788022\|ref\|YP_093851.1\| YvoA [Bacillus licheniformis ATCC 14580], gi\|52350524\|gb\|AAU43158.1\| Yv...	1.0E-44	[3..236]	[9..241]
gi\|30022140, gi\|... - gi\|30022140\|ref\|NP_833771.1\| GntR family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|...	4.0E-44	[3..235]	[12..243]
gi\|42739095, gi\|... - gi\|42783167\|ref\|NP_980414.1\| GntR family transcriptional regulator [Bacillus cereus ATCC 10987], gi\|... gi\|118418482, gi... - gi\|118479257\|ref\|YP_896408.1\| GntR family transcriptional regulator [Bacillus thuringiensis str. Al ...	8.0E-44	[3..235]	[15..246]
gi\|163863991, gi... - gi\|89206714\|ref\|ZP_01185268.1\| regulatory protein GntR, HTH:UbiC transcription regulator-associated ...	9.0E-44	[3..235]	[10..241]
gi\|221320695 - gi\|221320695\|ref\|ZP_03601989.1\| hypothetical protein BsubsJ_18840 [Bacillus subtilis subsp. subtilis... gi\|221315780 - gi\|221315780\|ref\|ZP_03597585.1\| hypothetical protein BsubsN3_18877 [Bacillus subtilis subsp. subtili... YVOA_BACSU - HTH-type transcriptional repressor YvoA OS=Bacillus subtilis (strain 168) GN=yvoA PE=1 SV=1 gi\|221324980 - gi\|221324980\|ref\|ZP_03606274.1\| hypothetical protein BsubsS_18996 [Bacillus subtilis subsp. subtilis... YVOA_BACSU - HTH-type transcriptional repressor yvoA OS=Bacillus subtilis GN=yvoA PE=1 SV=1	2.0E-43	[3..235]	[10..241]
gi\|183224270, gi... - gi\|89091630\|ref\|ZP_01164617.1\| regulatory protein GntR, HTH [Lactobacillus reuteri JCM 1112], gi\|890... gi\|227532687, gi... - gi\|227532687\|ref\|ZP_03962736.1\| GntR family transcriptional regulator [Lactobacillus reuteri MM4-1A]... gi\|227363525, gi... - gi\|227363525\|ref\|ZP_03847645.1\| GntR family transcriptional regulator [Lactobacillus reuteri MM2-3],... gi\|194468063, gi... - gi\|194468063\|ref\|ZP_03074049.1\| transcriptional regulator, GntR family [Lactobacillus reuteri 100-23...	7.0E-43	[3..232]	[4..232]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSKYEQIYT AISKSIDNKQ LKEGCKIPSE TELMKQYEAS RGTVRKAVDL LQERGYVQKI  60
   61 HGKGVFVLKR KNIEFNFGGI VSFQEENERL GRHCITEVVE IEKIKATKEI AKLLNVKEKT 120
  121 EIDHIKRVRN IDGEKVILDI NHFVSEHIPG LTSEIAAGSI YKYIEKELGL HISYSQRVIE 180
  181 VQSCTEDDRK YLDLNGTDYV VVVKNFTHFY DGSQFEYTES RHRLDIFHFS DVARRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	2ra5A
Description:	No description for 2ra5A was found.

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.67337973971815	bayes_pls_golite062009
DNA binding	2.4285792703914	bayes_pls_golite062009
transcription factor activity	2.41410286768641	bayes_pls_golite062009
nucleic acid binding	2.36311807645798	bayes_pls_golite062009
binding	1.53283393165662	bayes_pls_golite062009
catalytic activity	0.43947186099223	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: