YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260722, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260722, gi|....

Description	E-value	Query Range	Subject Range
gi\|42779707, gi\|... - gi\|42779707\|ref\|NP_976954.1\| glycerol uptake operon antiterminator regulatory protein, putative [Bac...	6.0E-75	[1..188]	[1..188]
gi\|51978211, gi\|... - gi\|52144742\|ref\|YP_082085.1\| glycerol-3-phosphate responsive antiterminator (G3P_antiterm) [Bacillus... gi\|118415478, gi... - gi\|118476253\|ref\|YP_893404.1\| glycerol-3-phosphate responsive antiterminator [Bacillus thuringiensis... gi\|228944319, gi... - gi\|228944319\|ref\|ZP_04106692.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus t... gi\|228931992, gi... - gi\|228931992\|ref\|ZP_04094884.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus t... gi\|49331711, gi\|... - gi\|49480155\|ref\|YP_034824.1\| glycerol-3-phosphate responsive antiterminator (G3P_antiterm) [Bacillus... gi\|228663257, gi... - gi\|229120216\|ref\|ZP_04249467.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|229089627, gi... - gi\|229089627\|ref\|ZP_04220889.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|196041293, gi... - gi\|196041293\|ref\|ZP_03108587.1\| putative glycerol uptake operon antiterminator regulatory protein [B... gi\|195992698, gi... - gi\|196034655\|ref\|ZP_03102063.1\| putative glycerol uptake operon antiterminator regulatory protein [B...	2.0E-74	[1..188]	[1..188]
gi\|75759468, gi\|... - gi\|75759468\|ref\|ZP_00739560.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus th... gi\|228860397, gi... - gi\|228899249\|ref\|ZP_04063513.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus t...	2.0E-74	[1..188]	[4..191]
gi\|206737326, gi... - gi\|206968406\|ref\|ZP_03229362.1\| putative glycerol uptake operon antiterminator regulatory protein [B... gi\|218161999, gi... - gi\|218234042\|ref\|YP_002365362.1\| putative glycerol uptake operon antiterminator regulatory protein [... gi\|228640096, gi... - gi\|229143289\|ref\|ZP_04271720.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|30018752, gi\|... - gi\|30018752\|ref\|NP_830383.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus cere... gi\|228657480, gi... - gi\|229125997\|ref\|ZP_04255021.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|229108171, gi... - gi\|229108171\|ref\|ZP_04237794.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|228956981, gi... - gi\|228956981\|ref\|ZP_04118758.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus t...	1.0E-73	[1..188]	[1..188]
gi\|228617952, gi... - gi\|229165504\|ref\|ZP_04293284.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|229131500, gi... - gi\|229131500\|ref\|ZP_04260391.1\| Glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|89206008, gi\|... - gi\|89206008\|ref\|ZP_01184572.1\| Glycerol-3-phosphate responsive antiterminator [Bacillus weihenstepha...	2.0E-73	[1..188]	[1..188]
gi\|25351887 - pir\|\|C83784 transcription antiterminator of glycerol uptake operon BH1075 [imported] - Bacillus halo... gi\|10173690, gi\|... - gi\|15613638\|ref\|NP_241941.1\| transcriptional antiterminator of glycerol uptake operon [Bacillus halo...	4.0E-66	[1..185]	[1..188]
gi\|214034876, gi... - gi\|254479181\|ref\|ZP_05092529.1\| Glycerol-3-phosphate responsive antiterminator subfamily [Carboxydib... gi\|20517021, gi\|... - gi\|20808407\|ref\|NP_623578.1\| glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Thermoan... gi\|20808407 - gi\|20808407\|ref\|NP_623578.1\| Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Thermoan...	4.0E-61	[1..181]	[9..189]
gi\|76795728, gi\|... - gi\|76795728\|ref\|ZP_00778100.1\| Glycerol-3-phosphate responsive antiterminator [Thermoanaerobacter et... gi\|241903308, gi... - gi\|241903308\|ref\|ZP_04788034.1\| glycerol-3-phosphate responsive antiterminator, GlpP [Thermoanaeroba...	3.0E-57	[1..181]	[9..189]
gi\|242258678, gi... - gi\|242258678\|ref\|ZP_04803422.1\| glycerol-3-phosphate responsive antiterminator, GlpP [Thermoanaeroba... gi\|167039668, gi... - gi\|167039668\|ref\|YP_001662653.1\| glycerol-3-phosphate responsive antiterminator [Thermoanaerobacter ...	6.0E-57	[1..181]	[9..189]
gi\|22778163, gi\|... - gi\|23099932\|ref\|NP_693398.1\| transcriptional antiterminator of glycerol uptake operon [Oceanobacillu...	1.0E-56	[6..179]	[7..180]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKEPYIAMI KDWKGYNTYK KLPKTVFLMT GSMLELPERV YELQKHGHDV FLHCDFIQGL  60
   61 NTNTEEALSY IQDVIGAQGI ISTKGSTIRN ANKIGLKTIQ RISIVDTLSL TKSIENCKTT 120
  121 KPNAVEIMPG IMPSIIKQLA EEIEFPIIAG GLIQTREDAE IAIRSGASAI STSHYEVWIQ 180
  181 EEKRSAIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.221849
Match:	1vkfA
Description:	Crystal structure of Glycerol uptake operon antiterminator-related protein (TM1436) from Thermotoga maritima at 1.65 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.53572000448636	bayes_pls_golite062009
transcription antiterminator activity	1.03328675497923	bayes_pls_golite062009
binding	0.61117010765727	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: