YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254021, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254021, gi|....

Description	E-value	Query Range	Subject Range
gi\|65317914 - gi\|65317914\|ref\|ZP_00390873.1\| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desucci...	2.0E-75	[1..426]	[17..442]
gi\|49331667, gi\|... - gi\|49480111\|ref\|YP_034760.1\| acetylornithine deacetylase [Bacillus thuringiensis serovar konkukian s...	1.0E-73	[1..424]	[1..424]
gi\|52144814, gi\|... - gi\|52144814\|ref\|YP_082015.1\| acetylornithine deacetylase [Bacillus cereus E33L], gi\|51978283\|gb\|AAU1...	1.0E-73	[1..424]	[1..424]
gi\|47556100, gi\|... - gi\|47567257\|ref\|ZP_00237971.1\| peptidase, M20/M25/M40 family, putative [Bacillus cereus G9241], gi\|4...	2.0E-73	[1..424]	[1..424]
gi\|42779628, gi\|... - gi\|42779628\|ref\|NP_976875.1\| acetylornithine deacetylase [Bacillus cereus ATCC 10987], gi\|42735544\|g...	2.0E-72	[1..424]	[1..424]
FAPD_BACHD - N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase OS=Bacillus halodurans GN=BH2678 PE=1 ... FAPD_BACHD - N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase OS=Bacillus halodurans (strain ATCC BA...	3.0E-72	[3..425]	[5..427]
gi\|163938422, gi... - gi\|89204671\|ref\|ZP_01183247.1\| Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase... gi\|229009916, gi... - gi\|229009916\|ref\|ZP_04167135.1\| Acetylornitine deacetylase [Bacillus mycoides DSM 2048], gi\|22875134...	4.0E-70	[1..424]	[1..424]
gi\|2633908, gi\|1... - gi\|2633908\|emb\|CAB13409.1\| ylmB [Bacillus subtilis subsp. subtilis str. 168], gi\|16078599\|ref\|NP_389... gi\|7474421 - pir\|\|B69876 acetylornithine deacetylase homolog ylmB - Bacillus subtilis	4.0E-70	[1..424]	[1..424]
gi\|29894223, gi\|... - gi\|30018682\|ref\|NP_830313.1\| acetylornithine deacetylase [Bacillus cereus ATCC 14579], gi\|29894223\|g...	1.0E-67	[19..424]	[1..406]
DAPE_PSYA2 - Succinyl-diaminopimelate desuccinylase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dapE ...	2.0E-62	[1..420]	[1..405]

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Predicted Domain #1

Region A:
Residues: [1-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEEVSQLLE QIDLRKDELL ELTKTLIRFE TPAPPARNTN EAQEFVAEFL RKRNFSVDKW  60
   61 DVYPNDPNVV GVKKGTESDT HKSLIINGHM DVAEVSADEA WETNPFEPFI KDGWLVGRGA 120
  121 ADMKGGLAGA LFAIQLLQEA GIELPGDVIF QSVIGEEVGE AGTLQCCKRG YDADFAVVVD 180
  181 TSDLHMQGQG GVITGWITVK SPQTFHDATR RQMIHAGGRL FGASAIEKMM KIVQSLQELE 240
  241 RHWAVMKTYE GYPSGTTTIN PAVIEGGRHA AFIADECRLW ITVHFYPNET HEQIIKEIEE 300
  301 YIGKVAAADP WLSENPPQFK WGGESMIVDR GEIFPSLEID SEHAAVKTLS SVHESILSKN 360
  361 AILDMSATVT DGGWFSEFHI PAVIYGPGTL EEAHSINEKV EIEQLIEFTK VITAFIYEWC 420
  421 HTKKID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.0
Match:	1vgyA
Description:	Crystal structure of succinyl diaminopimelate desuccinylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	3.0609849976664	bayes_pls_golite062009
peptidase activity	3.04706302825019	bayes_pls_golite062009
catalytic activity	2.3710874246093	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.30644893326426	bayes_pls_golite062009
exopeptidase activity	1.25673143627992	bayes_pls_golite062009
succinyl-diaminopimelate desuccinylase activity	0.851637991746991	bayes_pls_golite062009
carboxypeptidase activity	0.76593160329727	bayes_pls_golite062009
N-formylglutamate deformylase activity	0.17769913093601	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.0926675628351197	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: