YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49177365, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	506 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49177365, gi|....

Description	E-value	Query Range	Subject Range
gi\|65317852 - gi\|65317852\|ref\|ZP_00390811.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ...	0.0	[1..506]	[20..525]
gi\|42779619, gi\|... - gi\|42779619\|ref\|NP_976866.1\| fumarate hydratase, class I [Bacillus cereus ATCC 10987], gi\|42735535\|g...	0.0	[1..506]	[1..506]
gi\|49331862, gi\|... - gi\|49480306\|ref\|YP_034751.1\| fumarate hydratase [Bacillus thuringiensis serovar konkukian str. 97-27...	0.0	[1..506]	[1..506]
gi\|47556092, gi\|... - gi\|47567249\|ref\|ZP_00237963.1\| fumarate hydratase, class I, aerobic [Bacillus cereus G9241], gi\|4755...	0.0	[1..506]	[1..506]
gi\|52144825, gi\|... - gi\|52144825\|ref\|YP_082006.1\| fumarate hydratase [Bacillus cereus E33L], gi\|51978294\|gb\|AAU19844.1\| f...	0.0	[1..506]	[1..506]
gi\|74492436, gi\|... - gi\|75760086\|ref\|ZP_00740149.1\| Fumarate hydratase [Bacillus thuringiensis serovar israelensis ATCC 3... gi\|228899167, gi... - gi\|228899167\|ref\|ZP_04063437.1\| Fumarate hydratase class I, aerobic [Bacillus thuringiensis IBL 4222...	0.0	[1..506]	[20..525]
gi\|218232931, gi... - gi\|218232931\|ref\|YP_002365266.1\| fumarate hydratase, class I [Bacillus cereus B4264], gi\|218160888\|g... gi\|30018674, gi\|... - gi\|30018674\|ref\|NP_830305.1\| fumarate hydratase [Bacillus cereus ATCC 14579], gi\|29894215\|gb\|AAP0750...	0.0	[1..506]	[1..506]
gi\|152022995, gi... - gi\|89199953\|ref\|ZP_01178709.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	0.0	[1..506]	[20..526]
gi\|23105040 - ref\|ZP_00091498.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-termina... gi\|67086112, gi\|... - gi\|67156353\|ref\|ZP_00417946.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	0.0	[2..502]	[7..503]
gi\|77460673, gi\|... - gi\|77460673\|ref\|YP_350180.1\| fumarase [Pseudomonas fluorescens Pf0-1], gi\|77384676\|gb\|ABA76189.1\| pu...	0.0	[2..499]	[7..500]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLQESMYQ LIVETSTNLP KDVRRAIQQA KERENAGTRS AMALGTITNN IKMADDNISP  60
   61 ICQDTGMPTF KIYTPVGVNQ LKLKEAIYHA LERATKD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKLRPNSVDS LFGDNSGNNL GPGTPVIKFE QWEKDYIDAR LILKGGGCEN KNIQYSLPCE  60
   61 LEGLGRAGRD LEGIRKCLLH AVYQAQGQGC SAGVIGVGIG GDRTSGYELA KNQLFRTLDD 120
  121 VNPIPELQQL EEYVLENANK LGIGTMGFGG ETTLLGCKIG VYNRLPASFY VSVAYNCWAY 180
  181 RRLGVTIHPE T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [289-506]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEIMDWLYQE GDDTLQQEAQ EKTEQREIVL QAPITEEQIR KLRVGDVVTI NGMMYTGRDA  60
   61 IHKHLMDNDC PVDLNGQVIY HCGPVVVKDE NDNWQIKAAG PTTSIREEPY QGDIMKKFGI 120
  121 RAVIGKGGMG AKTLAALEEH GGVYLNAIGG AAQYYAECIK EVKDVDFLQF GIPEAMWHLR 180
  181 IEGFKAVVTM DSHGNSLHAD VDKTSLEKLA SFKEPVFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	2isbA
Description:	No description for 2isbA was found.

Predicted functions:

Term	Confidence	Notes
fumarate hydratase activity	4.07646355358082	bayes_pls_golite062009
catalytic activity	1.02123395223799	bayes_pls_golite062009
hydro-lyase activity	0.556078290190932	bayes_pls_golite062009
carbon-oxygen lyase activity	0.338858403016763	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: