YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253920, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	674 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253920, gi|....

Description	E-value	Query Range	Subject Range
gi\|65317815 - gi\|65317815\|ref\|ZP_00390774.1\| COG3325: Chitinase [Bacillus anthracis str. A2012]	0.0	[1..674]	[15..688]
gi\|51978330, gi\|... - gi\|52144861\|ref\|YP_081968.1\| chitinase [Bacillus cereus E33L], gi\|51978330\|gb\|AAU19880.1\| chitinase ...	0.0	[1..674]	[1..674]
gi\|251825720 - gi\|251825720\|gb\|ACT20919.1\| Chi74 [Bacillus thuringiensis serovar konkukian] gi\|49330053, gi\|... - gi\|49478497\|ref\|YP_034712.1\| chitinase [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|493...	0.0	[1..674]	[1..674]
gi\|42735493, gi\|... - gi\|42779577\|ref\|NP_976824.1\| chitinase B [Bacillus cereus ATCC 10987], gi\|42735493\|gb\|AAS39432.1\| ch...	0.0	[1..674]	[1..674]
gi\|22252973 - gi\|22252973\|gb\|AAM94024.1\| chitinase [Bacillus thuringiensis serovar sotto]	0.0	[1..674]	[15..688]
gi\|163938376, gi... - gi\|89204716\|ref\|ZP_01183292.1\| Glycoside hydrolase, family 18:Cellulose-binding, family II, bacteria...	0.0	[1..674]	[1..674]
gi\|168829991 - gi\|168829991\|gb\|ACA34287.1\| chitinase [Bacillus thuringiensis] gi\|28274788 - gi\|28274788\|gb\|AAO34713.1\| chitinase [Bacillus thuringiensis serovar kurstaki] gi\|228950936, gi... - gi\|228950936\|ref\|ZP_04113057.1\| Chitinase C [Bacillus thuringiensis serovar kurstaki str. T03a001], ...	0.0	[1..674]	[15..688]
gi\|95932443 - gi\|95932443\|gb\|ABF57674.1\| chitinase [Bacillus thuringiensis serovar colmeri]	0.0	[1..674]	[15..688]
gi\|27752281 - gi\|27752281\|gb\|AAL71886.2\| chitinase [Bacillus thuringiensis]	0.0	[1..674]	[1..674]
gi\|22001334 - gi\|22001334\|gb\|AAM88400.1\|AF526379_1 chitinase [Bacillus thuringiensis serovar israelensis]	0.0	[1..674]	[15..688]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSKKFTLLL LSLLLFLPLF LTNFITPNVV LADSQKQDQK IVGYFPSWGI YGRNYQVADI  60
   61 DASKLTHLNY AFADICWNGK HGNPST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.0
Match:	1itxA
Description:	Chitinase A1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [87-576]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPDNPNKQTW NCKESGVPLQ NKEVPNGTLV LGEPWADVTK SYPGSGTTWE DCDKYARCGN  60
   61 FGELKRLKAK YPHLKTIISV GGWTWSNRFS DMAADEKTRK VFADSTVDFL REYGFDGVDL 120
  121 DWEYPGVETI PGGSYRPEDK QNFTLLLQDV RNALTKAGAE DGKQYLLTIA SGASQRYADH 180
  181 TELKKISQIL DWINIMTYDF HGGWEATSNH NAALYKDPND PAADTKFYVD GAIDIYTNEG 240
  241 VPADKLVLGV PFYGRGWKSC GKENNGQYQP CKPGSDGKLA SKGTWDDYST GDTGVYDYGD 300
  301 LAANYVNKNG FVRGWNDVAK VPYLYNATTG TFISYDDNES MKYKTDYIKT KGLSGAMFWE 360
  361 LSGDCRTSPK YSCSGPKLLD TLVKELLGGP ITQKDIEPPT NVKNIAVTNK NSNSVQLNWT 420
  421 ASTDNVGVTE YEITAGEEKW STTTNSIAIK NLKPNTEYTF SILAKDAAGN KSQPTSILVK 480
  481 TDDANTTPPG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.09691
Match:	1e6nA
Description:	Chitinase B, C-terminal domain; Chitinase B, catalytic domain; Chitinase B
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chitinase activity	6.40555694403866	bayes_pls_golite062009
receptor binding	2.49274459751868	bayes_pls_golite062009
growth factor activity	2.4208679297225	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.91170236789651	bayes_pls_golite062009
amylase activity	1.38959979746158	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.34796838721403	bayes_pls_golite062009
chitin binding	1.29046765706168	bayes_pls_golite062009
binding	0.931465888895274	bayes_pls_golite062009
carbohydrate binding	0.83219070974164	bayes_pls_golite062009
glucosidase activity	0.766503513427695	bayes_pls_golite062009
pattern binding	0.629401292223251	bayes_pls_golite062009
catalytic activity	0.534516847146079	bayes_pls_golite062009
protein binding	0.41522498233974	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.266938437560648	bayes_pls_golite062009
hexosaminidase activity	0.21148675734804	bayes_pls_golite062009
hydrolase activity	0.178746202646272	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [577-674]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNSNATFSVT SNWGSGYNFS IVIKNSGTTP IKNWKLEFDY NGNLTQVWDS KISSKINNHY  60
   61 VITNAGWNGE IPPGGSITIG GAGTGTPAEL VNASISEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	1exgA
Description:	SOLUTION STRUCTURE OF A CELLULOSE BINDING DOMAIN FROM CELLULOMONAS FIMI BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
pattern binding	2.27215563583973	bayes_pls_golite062009
binding	1.34949978791263	bayes_pls_golite062009
polysaccharide binding	1.30518726696745	bayes_pls_golite062009
carbohydrate binding	1.22734683278419	bayes_pls_golite062009
protein binding	0.382621269105676	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: