YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|65317560, gi\|...
Organism:	Bacillus anthracis str. A2012
Length:	1203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|65317560, gi|....

Description	E-value	Query Range	Subject Range
gi\|74489823, gi\|... - gi\|75762689\|ref\|ZP_00742527.1\| DNA-directed RNA polymerase beta' chain [Bacillus thuringiensis serov... gi\|218895238, gi... - gi\|218895238\|ref\|YP_002443649.1\| DNA-directed RNA polymerase, beta' subunit [Bacillus cereus G9842],... gi\|228860756, gi... - gi\|228898856\|ref\|ZP_04063138.1\| DNA-directed RNA polymerase subunit beta' [Bacillus thuringiensis IB... gi\|228853715, gi... - gi\|228905900\|ref\|ZP_04069797.1\| DNA-directed RNA polymerase subunit beta' [Bacillus thuringiensis IB...	0.0	[1..1203]	[1..1203]
RPOC_BACC1 - DNA-directed RNA polymerase subunit beta' OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rpoC P...	0.0	[1..1203]	[1..1203]
gi\|228840578, gi... - gi\|228919053\|ref\|ZP_04082432.1\| DNA-directed RNA polymerase subunit beta' [Bacillus thuringiensis se... gi\|228809002, gi... - gi\|228950651\|ref\|ZP_04112785.1\| DNA-directed RNA polymerase subunit beta' [Bacillus thuringiensis se... gi\|229067868, gi... - gi\|229067868\|ref\|ZP_04201185.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus F65185], ... gi\|228705907, gi... - gi\|229077402\|ref\|ZP_04210057.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus Rock4-2],... gi\|228803109, gi... - gi\|228956544\|ref\|ZP_04118340.1\| DNA-directed RNA polymerase subunit beta' [Bacillus thuringiensis se... gi\|228727305, gi... - gi\|229041008\|ref\|ZP_04189771.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus AH676], g... gi\|229142909, gi... - gi\|229142909\|ref\|ZP_04271350.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus BDRD-ST24... gi\|229148512, gi... - gi\|229148512\|ref\|ZP_04276768.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus m1550], g... gi\|228675638, gi... - gi\|229107789\|ref\|ZP_04237425.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus Rock1-15]... gi\|229125620, gi... - gi\|229125620\|ref\|ZP_04254652.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus BDRD-Cer4... gi\|228606746, gi... - gi\|229176703\|ref\|ZP_04304107.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus 172560W],... gi\|228595062, gi... - gi\|229188388\|ref\|ZP_04315436.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus ATCC 1087... gi\|218232504, gi... - gi\|218232504\|ref\|YP_002364952.1\| DNA-directed RNA polymerase, beta' subunit [Bacillus cereus B4264],... RPOC_BACCR - DNA-directed RNA polymerase subunit beta' OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 ... gi\|206972180, gi... - gi\|206972180\|ref\|ZP_03233127.1\| DNA-directed RNA polymerase, beta' subunit [Bacillus cereus AH1134],...	0.0	[1..1203]	[1..1203]
gi\|229136949, gi... - gi\|229136949\|ref\|ZP_04265576.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus BDRD-ST26... gi\|228983358, gi... - gi\|228983358\|ref\|ZP_04143571.1\| DNA-directed RNA polymerase subunit beta' [Bacillus thuringiensis se... gi\|228588959, gi... - gi\|229194493\|ref\|ZP_04321296.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus m1293], g... gi\|228629562, gi... - gi\|229153881\|ref\|ZP_04282011.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus ATCC 4342... gi\|217957678, gi... - gi\|217957678\|ref\|YP_002336222.1\| DNA-directed RNA polymerase, beta' subunit [Bacillus cereus AH187],... RPOC_BACCZ - DNA-directed RNA polymerase subunit beta' OS=Bacillus cereus (strain ZK / E33L) GN=rpoC PE=3 SV=1	0.0	[1..1203]	[1..1203]
gi\|229009612, gi... - gi\|229009612\|ref\|ZP_04166838.1\| DNA-directed RNA polymerase subunit beta' [Bacillus mycoides DSM 204... gi\|228618354, gi... - gi\|229165091\|ref\|ZP_04292886.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus AH621], g... gi\|229131110, gi... - gi\|229131110\|ref\|ZP_04260022.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus BDRD-ST19... RPOC_BACWK - DNA-directed RNA polymerase subunit beta' OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpoC PE=3...	0.0	[1..1203]	[1..1203]
RPOC_BACHK - DNA-directed RNA polymerase subunit beta' OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) ... gi\|228943909, gi... - gi\|228943909\|ref\|ZP_04106294.1\| DNA-directed RNA polymerase subunit beta' [Bacillus thuringiensis se... gi\|228828033, gi... - gi\|228931605\|ref\|ZP_04094511.1\| DNA-directed RNA polymerase subunit beta' [Bacillus thuringiensis se... gi\|228925356, gi... - gi\|228925356\|ref\|ZP_04088452.1\| DNA-directed RNA polymerase subunit beta' [Bacillus thuringiensis se... gi\|225862155, gi... - gi\|225862155\|ref\|YP_002747533.1\| DNA-directed RNA polymerase, beta' subunit [Bacillus cereus 03BB102... RPOC_BACAH - DNA-directed RNA polymerase subunit beta' OS=Bacillus thuringiensis (strain Al Hakam) GN=rpoC PE=3 S... gi\|228600952, gi... - gi\|229182497\|ref\|ZP_04309748.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus BGSC 6E1]... RPOC_BACHK - DNA-directed RNA polymerase subunit beta' OS=Bacillus thuringiensis subsp. konkukian GN=rpoC PE=3 SV... gi\|229119765, gi... - gi\|229119765\|ref\|ZP_04249026.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus 95/8201],... gi\|228694073, gi... - gi\|229089234\|ref\|ZP_04220515.1\| DNA-directed RNA polymerase subunit beta' [Bacillus cereus Rock3-42]... gi\|218901307, gi... - gi\|218901307\|ref\|YP_002449141.1\| DNA-directed RNA polymerase, beta' subunit [Bacillus cereus AH820],... gi\|196026838, gi... - gi\|196042332\|ref\|ZP_03109607.1\| DNA-directed RNA polymerase, beta' subunit [Bacillus cereus NVH0597-...	0.0	[1..1203]	[1..1203]
gi\|47525359, gi\|... - gi\|47525359\|ref\|YP_016708.1\| DNA-directed RNA polymerase subunit beta' [Bacillus anthracis str. 'Ame... gi\|30253615, gi\|... - gi\|30260294\|ref\|NP_842671.1\| DNA-directed RNA polymerase subunit beta' [Bacillus anthracis str. Ames...	0.0	[10..1203]	[1..1194]
gi\|47570396, gi\|... - gi\|47570396\|ref\|ZP_00241036.1\| DNA-directed RNA polymerase, beta-prime subunit [Bacillus cereus G924... gi\|221237921, gi... - gi\|222093873\|ref\|YP_002527923.1\| DNA-directed RNA polymerase, beta' subunit [Bacillus cereus Q1], gi...	0.0	[10..1203]	[1..1194]
RPOC_BACHD - DNA-directed RNA polymerase subunit beta' OS=Bacillus halodurans GN=rpoC PE=3 SV=1 RPOC_BACHD - DNA-directed RNA polymerase subunit beta' OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / ...	0.0	[1..1203]	[1..1201]
gi\|89100357, gi\|... - gi\|89100357\|ref\|ZP_01173222.1\| DNA-directed RNA polymerase beta' subunit [Bacillus sp. NRRL B-14911]...	0.0	[1..1198]	[1..1199]

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Predicted Domain #1

Region A:
Residues: [1-1203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDVNNFEYM KIGLASPDKI RSWSYGEVKK PETINYRTLK PEKDGLFCER IFGPQKDWEC  60
   61 HCGKYKRVRY KGVVCDRCGV EVTRAKVRRE RMGHIELAAP VSHIWYFKGI PSRMGLVLDM 120
  121 SPRALEEVIY FASYVVTESG DTPLDKKQLL SEKEYRAYRD RYGSTFQAAM GAEAIKKLLQ 180
  181 DIDLDKEVDF LKEELKTAQG QRRTRAIKRL EVLEAFRNSG NEPSWMILDV LPVIPPELRP 240
  241 MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLGAPSII VQNEKRMLQE AVDALIDNGR 300
  301 RGRPVTGPGN RPLKSLSHML KGKQGRFRQN LLGKRVDYSG RSVIVVGPNL KMYQCGLPKE 360
  361 MALELFKPFV MKELVEKGLA HNIKSAKRKI ERVQPEVWDV LESVIKEHPV LLNRAPTLHR 420
  421 LGIQAFEPTL VEGRAIRLHP LVCTAYNADF DGDQMAVHVP LSSEAQAEAR LLMLAAQNIL 480
  481 NPKDGKPVVT PSQDMVLGNY YLTLEREGAI GEGMVFKDAN EALLAYQNGY VHLHTRVAVA 540
  541 ASAVNNVTFT EEQKNMLLLT TVGKLIFNEI LPESFPYINE PTNSNLEKET PAKYFVEKGA 600
  601 NIKEIIASRE EVAPFSKKIL GNIIAEVFKR FKITETSRML DRMKNLGFKY STKAGITVGV 660
  661 SDILVLGEKD EILHEAQAKV DNVIKQFRRG LITEEERYDR VISIWSNAKD VIQGKLMKSL 720
  721 NKRNPIFMMS DSGARGNASN FTQLAGMRGL MANPSGRIIE LPIKSSFREG LTVLEYFIST 780
  781 HGARKGLADT ALKTADSGYL TRRLVDVAQD VIVREDDCGT DRGLLIGAIK EGNEVIESLY 840
  841 DRLVGRFARK TVKHPETGEV LVAENQLITE DIAHIVENSG VETVNIRSAF TCNTRHGVCK 900
  901 KCYGRNLATG TDVEVGEAVG IIAAQSIGEP GTQLTMRTFH TGGVAGDDIT QGLPRIQEIF 960
  961 EARNPKGQAV ISEIDGVIAA INDVKDRQEV VVQGEVEART YAIPYGARLK VIPGQKISHG1020
 1021 KELTEGSIDP KELLKVTDIT AVQEYLLREV QKVYRMQGVE IGDKHVEVMV RQMLRKVRVS1080
 1081 DAGETDVLPG TLLDIHQFTD ANAKVLLQGK QPATARPVLL GITKASLETD SFLSAASFQE1140
 1141 TTRVLTDAAI KGKRDELLGL KENVIIGKLV PAGTGMNRYR KVDLVKTTQD DMNVENDEVY1200
 1201 VEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2ghoD
Description:	No description for 2ghoD was found.

Predicted functions:

Term	Confidence	Notes
DNA-directed RNA polymerase activity	10.2021663255698	bayes_pls_golite062009
RNA polymerase activity	10.2021663255698	bayes_pls_golite062009
nucleotidyltransferase activity	7.6240729546188	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	5.44374972993429	bayes_pls_golite062009
transferase activity	4.83218811360621	bayes_pls_golite062009
transcription regulator activity	2.34884279395902	bayes_pls_golite062009
binding	2.25732797427964	bayes_pls_golite062009
DNA binding	2.02586687916169	bayes_pls_golite062009
nucleic acid binding	1.91447180328254	bayes_pls_golite062009
catalytic activity	1.36406839864424	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	1.10272288118631	bayes_pls_golite062009
protein binding	0.251709363216351	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: