YRC Public Data Repository - Protein Structure Prediction

Protein:	PTA_DESVH
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	704 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTA_DESVH.

Description	E-value	Query Range	Subject Range
gi\|224467701, gi... - gi\|224583174\|ref\|YP_002636972.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=pta] [protein=phosphate acetyltransferase] [protein_id=YP_005238418.1] [location=2500770..2502... gi\|204929238, gi... - gi\|204929238\|ref\|ZP_03220381.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|207857756, gi... - gi\|207857756\|ref\|YP_002244407.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|198243957, gi... - gi\|198243957\|ref\|YP_002216409.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|199603748, gi... - gi\|200386650\|ref\|ZP_03213262.1\| putative phosphate acetyltransferase [Salmonella enterica subsp. ent... gi\|238912383 - gi\|238912383\|ref\|ZP_04656220.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|197248002, gi... - gi\|197248002\|ref\|YP_002147298.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|197265259, gi... - gi\|197265259\|ref\|ZP_03165333.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|194471410, gi... - gi\|194471410\|ref\|ZP_03077394.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|194713110, gi... - gi\|194737608\|ref\|YP_002115408.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... PTA_SALTY - Phosphate acetyltransferase OS=Salmonella typhimurium GN=pta PE=1 SV=1 PTA_SALTY - Phosphate acetyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pta P... gi\|194402543, gi... - gi\|194443880\|ref\|YP_002041600.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|194448796, gi... - gi\|194448796\|ref\|YP_002046393.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|168465954, gi... - gi\|195631250\|gb\|EDX49810.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|168817927, gi... - gi\|205344733\|gb\|EDZ31497.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|62180909, gi\|... - gi\|62180909\|ref\|YP_217326.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|205338663, gi... - gi\|205338663\|gb\|EDZ25427.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|205349317, gi... - gi\|205349317\|gb\|EDZ35948.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|168229712, gi... - gi\|205335916\|gb\|EDZ22680.1\| putative phosphate acetyltransferase [Salmonella enterica subsp. enteric... gi\|197289725, gi... - gi\|197289725\|gb\|EDY29088.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|205325221, gi... - gi\|205325221\|gb\|EDZ13060.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|167994690, gi... - gi\|205327484\|gb\|EDZ14248.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|161612930, gi... - gi\|161612930\|ref\|YP_001586895.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se...	523.0	[0..1]	[702..1]
gi\|78358281, gi\|... - gi\|78358281\|ref\|YP_389730.1\| phosphate acetyltransferase [Desulfovibrio desulfuricans subsp. desulfu...	523.0	[0..2]	[702..17]
gi\|56412765, gi\|... - gi\|56412765\|ref\|YP_149840.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|214002012 - gi\|214002012\|ref\|ZP_03412747.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|29141041, gi\|... - gi\|29141041\|ref\|NP_804383.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|213427003 - gi\|213427003\|ref\|ZP_03359753.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|16761263 - gi\|16761263\|ref\|NP_456880.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|197093175, gi... - gi\|197361699\|ref\|YP_002141335.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|25321719, gi\|... - gi\|25321719\|pir\|\|AH0798 phosphate acetyltransferase (EC 2.3.1.8) [imported] - Salmonella enterica su...	523.0	[0..1]	[702..1]
gi\|37526984, gi\|... - gi\|37526984\|ref\|NP_930328.1\| phosphate acetyltransferase [Photorhabdus luminescens subsp. laumondii ...	516.0	[0..1]	[699..1]
gi\|218352628, gi... - gi\|218695896\|ref\|YP_002403563.1\| phosphate acetyltransferase [Escherichia coli 55989], gi\|218352628\|... gi\|218554854, gi... - gi\|218554854\|ref\|YP_002387767.1\| phosphate acetyltransferase [Escherichia coli IAI1], gi\|218361622\|e... gi\|188493696, gi... - gi\|188493696\|ref\|ZP_03000966.1\| phosphate acetyltransferase [Escherichia coli 53638], gi\|188488895\|g... gi\|74312814, gi\|... - gi\|74312814\|ref\|YP_311233.1\| phosphate acetyltransferase [Shigella sonnei Ss046], gi\|73856291\|gb\|AAZ... gi\|187428070, gi... - gi\|187731078\|ref\|YP_001881118.1\| phosphate acetyltransferase [Shigella boydii CDC 3083-94], gi\|18742... gi\|170081913, gi... - gi\|170081913\|ref\|YP_001731233.1\| phosphate acetyltransferase [Escherichia coli str. K-12 substr. DH1... gi\|170019394, gi... - gi\|170019394\|ref\|YP_001724348.1\| phosphate acetyltransferase [Escherichia coli ATCC 8739], gi\|169754... gi\|194436108, gi... - gi\|194436108\|ref\|ZP_03068210.1\| phosphate acetyltransferase [Escherichia coli 101-1], gi\|194424836\|g... gi\|192958498, gi... - gi\|193068219\|ref\|ZP_03049183.1\| phosphate acetyltransferase [Escherichia coli E110019], gi\|192958498... gi\|89109117, gi\|... - gi\|89109117\|ref\|AP_002897.1\| phosphate acetyltransferase [Escherichia coli str. K-12 substr. W3110],... gi\|193062345, gi... - gi\|193062345\|ref\|ZP_03043440.1\| phosphate acetyltransferase [Escherichia coli E22], gi\|192932011\|gb\|... gi\|124501933, gi... - gi\|124526462\|ref\|ZP_01698415.1\| phosphate acetyltransferase [Escherichia coli B], gi\|124501933\|gb\|EA... gi\|191166525, gi... - gi\|191166525\|ref\|ZP_03028355.1\| phosphate acetyltransferase [Escherichia coli B7A], gi\|190903485\|gb\|... PTA_SHIFL - Phosphate acetyltransferase OS=Shigella flexneri GN=pta PE=3 SV=2 gi\|157161785, gi... - gi\|157161785\|ref\|YP_001459103.1\| phosphate acetyltransferase [Escherichia coli HS], gi\|157067465\|gb\|... PTA_ECOLI - Phosphate acetyltransferase (EC 2.3.1.8) (Phosphotransacetylase) - Escherichia coli gi\|157158227, gi... - gi\|157158227\|ref\|YP_001463641.1\| phosphate acetyltransferase [Escherichia coli E24377A], gi\|15708025... EG20173 - phosphate acetyltransferase / Phosphate acetyltransferase, produces acetyl phosphate; creBC regulon;... gi\|24052735, gi\|... - gi\|24113669\|ref\|NP_708179.1\| phosphate acetyltransferase [Shigella flexneri 2a str. 301], gi\|2405273... gi\|30041978, gi\|... - gi\|30063723\|ref\|NP_837894.1\| phosphate acetyltransferase [Shigella flexneri 2a str. 2457T], gi\|30041... gi\|110806260, gi... - gi\|110806260\|ref\|YP_689780.1\| phosphate acetyltransferase [Shigella flexneri 5 str. 8401], gi\|110615... EG20173 - phosphate acetyltransferase / Phosphate acetyltransferase, produces acetyl phosphate; creBC regulon;... gi\|238862023, gi... - gi\|238901472\|ref\|YP_002927268.1\| phosphate acetyltransferase [Escherichia coli BW2952], gi\|238862023... gi\|253772779, gi... - gi\|254289067\|ref\|YP_003054815.1\| phosphate acetyltransferase [Escherichia coli BL21(DE3)], gi\|253978... gi\|251785657, gi... - gi\|251785657\|ref\|YP_002999961.1\| hypothetical protein B21_02182 [Escherichia coli BL21], gi\|24237793... gi\|254162306, gi... - gi\|254162306\|ref\|YP_003045414.1\| phosphate acetyltransferase [Escherichia coli B str. REL606], gi\|25...	516.0	[0..1]	[701..1]
gi\|1359438, gi\|1... - gi\|1359438\|dbj\|BAA04502.1\| phosphoacetyltransferase [Escherichia coli], pir\|\|JX0357 phosphate acetyl...	516.0	[0..1]	[701..1]
gi\|49612489, gi\|... - gi\|50121963\|ref\|YP_051130.1\| phosphate acetyltransferase [Pectobacterium atrosepticum SCRI1043], gi\|...	516.0	[0..1]	[699..1]
gi\|209765002, gi... - pir\|\|E91026 phosphotransacetylase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509... gi\|12516653, gi\|... - gi\|15802844\|ref\|NP_288871.1\| phosphate acetyltransferase [Escherichia coli O157:H7 EDL933], gi\|12516... gi\|13362651, gi\|... - gi\|15832435\|ref\|NP_311208.1\| phosphate acetyltransferase [Escherichia coli O157:H7], gi\|13362651\|dbj... gi\|13362651, gi\|... - gi\|15832435\|ref\|NP_311208.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|208819968, gi... - gi\|208819968\|ref\|ZP_03260288.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4042], ... gi\|209159857, gi... - gi\|209398457\|ref\|YP_002271706.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4115],... gi\|217327241, gi... - gi\|217327241\|ref\|ZP_03443324.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. TW14588],... gi\|218705827, gi... - gi\|218705827\|ref\|YP_002413346.1\| phosphate acetyltransferase [Escherichia coli UMN026], gi\|218432924... gi\|189405670, gi... - gi\|189405670\|ref\|ZP_02823477.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC508], g... gi\|195935676 - gi\|195935676\|ref\|ZP_03081058.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4024] gi\|208728335, gi... - gi\|208808534\|ref\|ZP_03250871.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4206], ... gi\|208733710, gi... - gi\|208812433\|ref\|ZP_03253762.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4045], ... gi\|189357739, gi... - gi\|189402105\|ref\|ZP_02780059.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4401], ... gi\|189403068, gi... - gi\|189403068\|ref\|ZP_02792933.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4486], ... gi\|189403966, gi... - gi\|189403966\|ref\|ZP_02786268.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4501], ... gi\|189372882, gi... - gi\|189404943\|ref\|ZP_02812214.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC869], g... gi\|254593590, gi... - gi\|254794190\|ref\|YP_003079027.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. TW14359]... gi\|187771320, gi... - gi\|187775769\|ref\|ZP_02797981.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4196], ... gi\|188024704, gi... - gi\|188024704\|ref\|ZP_02773171.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4113], ... gi\|189001885, gi... - gi\|189010142\|ref\|ZP_02805162.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4076], ...	515.0	[0..1]	[701..1]
gi\|82777705, gi\|... - gi\|82777705\|ref\|YP_404054.1\| phosphate acetyltransferase [Shigella dysenteriae Sd197], gi\|81241853\|g...	514.0	[0..1]	[701..1]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNLYITAT ESKSGKSAVV LGMMQLLLRD VRKVAFFRPI INQASTDVRD HDINLILRHF  60
   61 GLDIAYEDTY AYSLQDAREL INNGQHATLL DNILKKYKKL EDAYDFVLCE GTDFLGKDAA 120
  121 FEFELNADIA ANLGCPVMVV ANGQQKAARE LIASTQLTID LLDEKGLDVV TAVINRATVT 180
  181 EAEREEIIKS LECKVNCSNP LAVYVLPEES TLGKPTMNDV KKWLGAQVLY GHGRLDTLVD 240
  241 DYII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.221849
Match:	1g3qA
Description:	Cell division regulator MinD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	1.29060292615008	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [245-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAMQIGNFLD YVSQGCLVIT PGDRSDIILS SLASRLSTAY PDISGLLLTG GLEPAANVHR  60
   61 LIEGWTGVPI PILSVKDHTY KTIQTLNELY GKIEPDNDRK INTALALFER HIDSSELGSR 120
  121 LINRKS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.68
Match:	2iojA
Description:	No description for 2iojA was found.

Predicted Domain #3

Region A:
Residues: [371-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRITPKMFEF NLIEKAKRNR MRIVLPEGAE ERILRAADIL VRREVADIIL LGDANTVGSR  60
   61 IGDLGLDMDG VQIVQPNLSP KFDEYVAAYH ECRKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.63
Match:	1td9A
Description:	Crystal Structure of a Phosphotransacetylase from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [467-704]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GISMEQARDM MNDPTYFGTM MVHKGDADGM VSGAINTTAH TIRPAFEFIK TKPGVSIVSS  60
   61 VFLMCLKDRV LVFGDCAVNP NPTAEQLAEI AISASHTARI FGVDPRVAML SYSTGSSGKG 120
  121 ADVEKVIEAT RIAKERAPEL LLEGPLQYDA AIDMDVARTK LPGSTVAGQA TVFIFPDLNT 180
  181 GNNTYKAVQR AAGAVAIGPV LQGLNKPVND LSRGCTVADI VNTVAITAIQ AQAEKGLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.522879
Match:	1r5jA
Description:	Crystal Structure of a Phosphotransacetylase from Streptococcus pyogenes
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
isocitrate dehydrogenase activity	4.07470589461733	bayes_pls_golite062009
isocitrate dehydrogenase (NAD+) activity	2.76980877987445	bayes_pls_golite062009
catalytic activity	2.71251959637136	bayes_pls_golite062009
isocitrate dehydrogenase (NADP+) activity	2.37654914320201	bayes_pls_golite062009
oxidoreductase activity	1.34383793575786	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.23338300186555	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.23134321553105	bayes_pls_golite062009
acetyltransferase activity	0.475874744828042	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: