YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46581115, gi\|...
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46581115, gi|....

Description	E-value	Query Range	Subject Range
gi\|6900377, gi\|1... - gi\|6900377\|emb\|CAB71989.1\| hypothetical protein [Neisseria meningitidis], pir\|\|B81811 conserved hypo... gi\|15794735, gi\|... - gi\|7380484\|emb\|CAB85070.1\| conserved hypothetical protein [Neisseria meningitidis Z2491], gi\|2187686...	503.0	[0..3]	[308..2]
gi\|57904725 - gi\|57904725\|gb\|AAW58970.1\| major head subunit [Cloning vector MuNXKan] CAPSD_BPMU - Major capsid protein OS=Enterobacteria phage Mu GN=T PE=1 SV=1	502.0	[0..3]	[308..2]
gi\|188490769, gi... - gi\|75513089\|ref\|ZP_00735551.1\| COG4397: Mu-like prophage major head subunit gpT [Escherichia coli 53... gi\|194430091, gi... - gi\|75208650\|ref\|ZP_00708954.1\| COG4397: Mu-like prophage major head subunit gpT [Escherichia coli B1...	501.0	[0..3]	[308..2]
gi\|24346191, gi\|... - gi\|24372266\|ref\|NP_716308.1\| prophage MuSo1, major head subunit, putative [Shewanella oneidensis MR-... SO0675 - prophage MuSo1 major head subunit, putative	486.0	[0..1]	[308..1]
gi\|25357758 - pir\|\|F91250 probable major head subunit [imported] - Escherichia coli (strain O157:H7, substrain RI... gi\|217324925, gi... - gi\|217324925\|ref\|ZP_03441009.1\| major head subunit [Escherichia coli O157:H7 str. TW14588], gi\|21732... gi\|13364450, gi\|... - gi\|15834228\|ref\|NP_313001.1\| putative major head subunit [Escherichia coli O157:H7], gi\|13364450\|dbj... gi\|189368019, gi... - gi\|189368019\|gb\|EDU86435.1\| major head subunit [Escherichia coli O157:H7 str. EC4501], gi\|168761518\|... gi\|13364450, gi\|... - gi\|15834228\|ref\|NP_313001.1\| putative major head subunit [Escherichia coli O157:H7 str. Sakai], gi\|1...	476.0	[0..4]	[308..5]
gi\|33151721, gi\|... - gi\|33151721\|ref\|NP_873074.1\| bacteriophage mu T protein [Haemophilus ducreyi 35000HP], gi\|33147942\|g...	475.0	[0..1]	[309..1]
gi\|160875257, gi... - gi\|160875257\|ref\|YP_001554573.1\| prophage MuSo1, major head subunit, putative [Shewanella baltica OS...	462.0	[0..1]	[308..1]
VPT_HAEIN - Mu-like prophage FluMu major head subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 /... VPT_HAEIN - Mu-like prophage FluMu major head subunit OS=Haemophilus influenzae GN=HI_1505 PE=4 SV=1	461.0	[0..1]	[292..1]
gi\|134138568, gi... - gi\|67545318\|ref\|ZP_00423241.1\| conserved hypothetical protein [Burkholderia vietnamiensis G4], gi\|67...	460.0	[0..4]	[309..3]
gi\|32029864, gi\|... - gi\|32029864\|ref\|ZP_00132818.1\| COG4397: Mu-like prophage major head subunit gpT [Haemophilus somnus ...	452.0	[0..3]	[308..5]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIVTNALLA TMRTGFNAAF QRGQNRAAPM WPTVATLIPS TAAQNTYGWL GQFPKLREWV  60
   61 GDRMFRHMQE HGYAITNKLY ESTVGVARTA IEDDSLGVYT PLFEEMGYGA STHPDELVWG 120
  121 LLKNGHATNC FDGQSFFDTD HPVYPEVDGT GSPATVSNNL VPSTDAG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [168-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAWFLLDVSR PLKPIIFQER TKPQLQVITN PDSEHVFIKD EIPYGVRYRC NVGFGFWQMA  60
   61 VRSQHAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [235-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAAGFEAALL KLQTMKADGG RPLGLGTGGK AGLLLVVPPT LNGAARRVVG VSELPGGGTN  60
   61 PWYDAATVVA SPWLA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits