YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46580017, gi\|...
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	350 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46580017, gi|....

Description	E-value	Query Range	Subject Range
gi\|186685052, gi... - gi\|23129256\|ref\|ZP_00111088.1\| COG1226: Kef-type K+ transport systems, predicted NAD-binding compone...	6.0E-48	[28..350]	[1..324]
gi\|241881279, gi... - gi\|241906686\|ref\|ZP_04791268.1\| TrkA-N domain protein [Desulfovibrio vulgaris RCH1], gi\|241881279\|gb... gi\|120602572, gi... - gi\|120602572\|ref\|YP_966972.1\| TrkA domain-containing protein [Desulfovibrio vulgaris subsp. vulgaris...	8.0E-48	[4..350]	[1..347]
gi\|67857122, gi\|... - gi\|67921005\|ref\|ZP_00514524.1\| TrkA-N:TrkA-C:TrkA-C [Crocosphaera watsonii WH 8501], gi\|67857122\|gb\|...	4.0E-47	[10..350]	[1..341]
gi\|17130425, gi\|... - gi\|17228574\|ref\|NP_485122.1\| hypothetical protein all1079 [Nostoc sp. PCC 7120], gi\|17130425\|dbj\|BAB... gi\|25314198 - pir\|\|AD1941 hypothetical protein all1079 [imported] - Nostoc sp. (strain PCC 7120)	8.0E-47	[28..350]	[1..324]
gi\|86554803, gi\|... - gi\|86606261\|ref\|YP_475024.1\| potassium transporter, voltage-gated ion channel (VIC) family [Cyanobac... gi\|86554803, gi\|... - gi\|86606261\|ref\|YP_475024.1\| VIC family potassium channel protein [Synechococcus sp. JA-3-3Ab], gi\|8...	1.0E-46	[19..350]	[13..345]
gi\|86609264, gi\|... - gi\|86609264\|ref\|YP_478026.1\| VIC family potassium channel protein [Synechococcus sp. JA-2-3B'a(2-13)... gi\|86609264 - gi\|86609264\|ref\|YP_478026.1\| potassium transporter, voltage-gated ion channel (VIC) family [Cyanobac...	2.0E-46	[19..350]	[13..345]
gi\|75703660, gi\|... - gi\|75909935\|ref\|YP_324231.1\| hypothetical protein Ava_3731 [Anabaena variabilis ATCC 29413], gi\|7570...	2.0E-46	[28..350]	[1..324]
gi\|35211496, gi\|... - gi\|37520502\|ref\|NP_923879.1\| potassium channel protein [Gloeobacter violaceus PCC 7421], gi\|35211496...	1.0E-45	[18..350]	[6..340]
gi\|7447543 - pir\|\|S75244 potassium channel protein sll0993 - Synechocystis sp. (strain PCC 6803) gi\|1652235, gi\|1... - gi\|1652235\|dbj\|BAA17158.1\| potassium channel [Synechocystis sp. PCC 6803], gi\|16329750\|ref\|NP_440478...	2.0E-44	[27..350]	[26..350]
gi\|21646021, gi\|... - gi\|21672962\|ref\|NP_661027.1\| potassium channel protein, putative [Chlorobium tepidum TLS], gi\|216460...	4.0E-43	[18..349]	[5..336]

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Predicted Domain #1

Region A:
Residues: [1-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTMRGRLPL STRIYRLRNR FGSVWPLLIG QVSLLCVFIC ATLGYMYIEG WSAFDSFYMV  60
   61 VITLSTIGFG EVHPLSSQGR LLTTLVVFAG VGNFAFIIGA FSQLLVDGKL YRYMGRRRVL 120
  121 KAIAKLRDHC IVCGYGRIGS VVAKELMEEG VALVVIENDP AMIEALETEG ILHLAGDATN 180
  181 DELLQAAGIE RARALVAALS LDSANVYVVL SAHQINPSMT IVARASEPSH IGKLKLAGAD 240
  241 RVFLPHHLGG LRMAQSILRP TVTSFIELAH TRSDLSIQME ELEIGDDSVL VGKTLIESGI 300
  301 RPQYNLIIIG VKRPDGTMHF NPESTYTLQA RDTLIAVGFP ENFKQFQEIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.39794
Match:	1lnqA
Description:	Potassium channel-related protein MthK
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
inward rectifier potassium channel activity	2.81500823121833	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	1.14277756574473	bayes_pls_golite062009
catalytic activity	1.03099072397093	bayes_pls_golite062009
cation transmembrane transporter activity	0.94135881928576	bayes_pls_golite062009
ion transmembrane transporter activity	0.892063888939586	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.697182336588227	bayes_pls_golite062009
potassium ion transmembrane transporter activity	0.613422790701159	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.579753312473772	bayes_pls_golite062009
ligand-gated ion channel activity	0.50675258782641	bayes_pls_golite062009
ligand-gated channel activity	0.50675258782641	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.409257304074437	bayes_pls_golite062009
potassium channel activity	0.175535409866419	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.0910712778990327	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: