YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46579402, gi\|...
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46579402, gi|....

Description	E-value	Query Range	Subject Range
gi\|120603043, gi... - gi\|120603043\|ref\|YP_967443.1\| CutA1 divalent ion tolerance protein [Desulfovibrio vulgaris subsp. vu...	5.0E-48	[20..146]	[1..127]
gi\|51971807 - gi\|51971807\|dbj\|BAD44568.1\| truncated copper-binding protein CUTA (CUTA) [Arabidopsis thaliana]	8.0E-42	[9..146]	[35..175]
CUTA_XENLA - Protein CutA homolog OS=Xenopus laevis GN=cuta PE=2 SV=2	5.0E-39	[13..141]	[17..145]
gi\|124806981, gi... - gi\|23509167\|ref\|NP_701835.1\| cutA, putative [Plasmodium falciparum 3D7], gi\|23497009\|gb\|AAN36559.1\|A...	3.0E-38	[42..146]	[53..157]
gi\|114606922 - gi\|114606922\|ref\|XP_001171110.1\| PREDICTED: cutA divalent cation tolerance homolog isoform 7 [Pan tr...	3.0E-38	[32..145]	[52..168]
CUTA - cutA divalent cation tolerance homolog (E. coli)	4.0E-38	[32..145]	[52..168]
gi\|109070772 - gi\|109070772\|ref\|XP_001116293.1\| PREDICTED: cutA divalent cation tolerance homolog (E. coli) isoform...	5.0E-38	[32..145]	[52..168]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPAECATPV RRGCGKSHAM GTLPSPARCA MQDAPRKDNG RSPMPSMVYI TASGPDEADA  60
   61 IAAALVERRL AACVNVLGPI RSVYRWEGAV EKATEVALIA KTADDRVQDL IGAVRSMHSY 120
  121 DVPCIVVLPV TTGNPDFLDW IHAETR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	1xk8A
Description:	Divalent cation tolerant protein CUTA from Homo sapiens O60888
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.00383441309208	bayes_pls_golite062009
transcription regulator activity	0.582366961716094	bayes_pls_golite062009
protein binding	0.305475756875782	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: