YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985352, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985352, gi|....

Description	E-value	Query Range	Subject Range
gi\|78390357, gi\|... - gi\|78492614\|ref\|ZP_00844850.1\| Cytochrome c-type biogenesis protein CcmF [Rhodopseudomonas palustris...	204.0	[0..4]	[236..264]
gi\|929790 - gi\|929790\|emb\|CAA88018.1\| inner membrane or periplasmic protein [Pseudomonas fluorescens]	197.0	[0..8]	[236..56]
gi\|119773389, gi... - gi\|68548572\|ref\|ZP_00588061.1\| Cytochrome c-type biogenesis protein CcmF [Shewanella amazonensis SB2...	193.0	[0..3]	[239..47]
gi\|82702338, gi\|... - gi\|82702338\|ref\|YP_411904.1\| cytochrome c-type biogenesis protein CcmF [Nitrosospira multiformis ATC...	193.0	[0..2]	[236..46]
gi\|83857085, gi\|... - gi\|83857085\|ref\|ZP_00950613.1\| putative membrane protein [Croceibacter atlanticus HTCC2559], gi\|8384...	193.0	[0..7]	[239..772]
gi\|120324183, gi... - gi\|77952371\|ref\|ZP_00816787.1\| Cytochrome c-type biogenesis protein CcmF [Marinobacter aquaeolei VT8...	192.0	[0..2]	[236..79]
SO0266 - cytochrome c-type biogenesis protein CcmF gi\|24345681, gi\|... - gi\|24371864\|ref\|NP_715906.1\| cytochrome c-type biogenesis protein CcmF [Shewanella oneidensis MR-1],...	192.0	[0..3]	[239..47]
gi\|196157868, gi... - gi\|88793799\|ref\|ZP_01109512.1\| Cytochrome c biogenesis factor [Alteromonas macleodii 'Deep ecotype']...	192.0	[0..3]	[239..47]
gi\|54308145, gi\|... - gi\|54308145\|ref\|YP_129165.1\| putative cytochrome c-type biogenesis protein CcmF [Photobacterium prof...	191.0	[0..2]	[236..46]
gi\|90411054, gi\|... - gi\|90411054\|ref\|ZP_01219068.1\| Putative cytochrome c-type biogenesis protein CcmF [Photobacterium pr...	191.0	[0..6]	[236..50]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLLVASAA LYLFGSFRRP LFALGLGAGL AYLALRGISL GRLPLVGPHD TIAFFSASIG  60
   61 LMTLPFLFSP SLRNSSAFPW ATGGTAAVFA LFSLAFPALA MPLPPILNTL WFELHVALAF 120
  121 FAYALFTIGA IMGVLFLAGG ERRLLDLQYR AALVGYTFFS GSMVAGGIWG YYAWGTYWLW 180
  181 TPKELWTSIL WIFYTFWLHL RLRGAGGDRL LAWTGILGFG VMLFTYLGVS MLMKSSHSF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	14.267606
Match:	PF01578.11
Description:	No description for PF01578.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits