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Protein Overview: SO0266

General Information:
Name(s) found: SO0266 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • cytochrome c-type biogenesis protein CcmF [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 659 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPELGHFSL IIGVAFAFLL TSVPLIGVAR KDQYLVRYAW PLAYGMFFFI ALSVVSLGYS  60
   61 FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FALSTWAASV ALFSKGLEEV 120
  121 FTARVLAVLA LIVIGFSLFM LLTSSPFERI FPMPAEGRDL NPMLQDVGLI FHPPMLYLGY 180
  181 VGFSVSFAFA IAALMSGHLD SAWARWSRPW TLAAWVFLTG GIALGSWWAY YELGWGGWWF 240
  241 WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS 300
  301 VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA RFELKSKETM LLVCNVLLTV 360
  361 AAGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFAFMGVGPI IRWKKSKAGE 420
  421 LKRQLLVPAL VSLVIGIVTP FIVDGAFNAW VACGIAAAAW IILATAKAAY SIVKPKDGEV 480
  481 SIARMGRSQL GMIIAHLGIA VSVIGATMVS NYSVEKSVRM GPGVSQELAG YTFKYLETKN 540
  541 VVGPNYTAQQ GQIEIYKGDK LLTLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI 600
  601 SSTEFAVRLN YKPFVRWLWF GAIFMMVGGF FAASDKRYRS KVAATVKPQA EKAKLATAQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..200] MSA 1.454994 View MSA. No confident structure predictions are available.
    2 View Details [201..337] MSA 11.457997 View MSA. No confident structure predictions are available.
    3 View Details [338..432] MSA 1.128995 View MSA. No confident structure predictions are available.
    4 View Details [433..659] MSA 4.120978 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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