YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985087, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985087, gi|....

Description	E-value	Query Range	Subject Range
gi\|82737704, gi\|... - gi\|82737704\|ref\|ZP_00900550.1\| flagella basal body P-ring formation protein FlgA [Pseudomonas putida...	211.0	[0..17]	[247..17]
gi\|107102882 - gi\|107102882\|ref\|ZP_01366800.1\| hypothetical protein PaerPA_01003950 [Pseudomonas aeruginosa PACS2]	208.0	[0..17]	[247..2]
gi\|49082058 - gi\|49082058\|gb\|AAT50429.1\| PA3350 [synthetic construct]	208.0	[0..17]	[247..2]
gi\|11349880 - pir\|\|C83227 hypothetical protein PA3350 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|15598546, gi\|... - gi\|9949483\|gb\|AAG06738.1\|AE004757_7 hypothetical protein PA3350 [Pseudomonas aeruginosa PAO1], gi\|15... gi\|218770677, gi... - gi\|218890454\|ref\|YP_002439318.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas ... gi\|254236312, gi... - gi\|84319933\|ref\|ZP_00968320.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Pseudomona... gi\|126195415, gi... - gi\|84326003\|ref\|ZP_00974034.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Pseudomona...	208.0	[0..17]	[247..2]
gi\|116051365, gi... - gi\|46164182\|ref\|ZP_00136722.2\| COG1261: Flagellar basal body P-ring biosynthesis protein [Pseudomona...	207.0	[0..17]	[247..2]
gi\|24986118, gi\|... - gi\|26991083\|ref\|NP_746508.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas puti...	204.0	[0..28]	[247..6]
gi\|70731829, gi\|... - gi\|70731829\|ref\|YP_261571.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas fluo...	204.0	[0..10]	[246..13]
gi\|94413584, gi\|... - gi\|94413584\|ref\|ZP_01293463.1\| hypothetical protein PaerP_01004600 [Pseudomonas aeruginosa PA7], gi\|...	202.0	[0..17]	[247..2]
gi\|23092309 - gi\|23092309\|gb\|AAN08634.1\| FlgA [Aeromonas hydrophila]	202.0	[0..7]	[248..109]
gi\|77460475, gi\|... - gi\|77460475\|ref\|YP_349982.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas fluo...	202.0	[0..19]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGKQLAKGW SVMRAAAMAL IACMMCIGVA FATTGTQVVK EAGIRAVVAE YVRERTAGLG  60
   61 VETEIRKMAP IGDLKLPAGT VSYEVQAPRS WEGWGRANLA LIVRVDDR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQRNIPVTVD VEALADAVVA AHPLARGDII TSDDVTVQKR DISSVNGRVY RSIDEVVGKR  60
   61 VKNAVRANTP LSGASIEKVP LVKSGQLVTI IAESPALRLT ATGKARGNGA EGDIIKVQNM 120
  121 GSLKEIPARV IDVGTVQVDF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.76
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits