YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985087, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985087, gi|....

Description	E-value	Query Range	Subject Range
gi\|82737704, gi\|... - gi\|82737704\|ref\|ZP_00900550.1\| flagella basal body P-ring formation protein FlgA [Pseudomonas putida...	211.0	[0..17]	[247..17]
gi\|107102882 - gi\|107102882\|ref\|ZP_01366800.1\| hypothetical protein PaerPA_01003950 [Pseudomonas aeruginosa PACS2]	208.0	[0..17]	[247..2]
gi\|49082058 - gi\|49082058\|gb\|AAT50429.1\| PA3350 [synthetic construct]	208.0	[0..17]	[247..2]
gi\|11349880 - pir\|\|C83227 hypothetical protein PA3350 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|15598546, gi\|... - gi\|9949483\|gb\|AAG06738.1\|AE004757_7 hypothetical protein PA3350 [Pseudomonas aeruginosa PAO1], gi\|15... gi\|218770677, gi... - gi\|218890454\|ref\|YP_002439318.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas ... gi\|254236312, gi... - gi\|84319933\|ref\|ZP_00968320.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Pseudomona... gi\|126195415, gi... - gi\|84326003\|ref\|ZP_00974034.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Pseudomona...	208.0	[0..17]	[247..2]
gi\|116051365, gi... - gi\|46164182\|ref\|ZP_00136722.2\| COG1261: Flagellar basal body P-ring biosynthesis protein [Pseudomona...	207.0	[0..17]	[247..2]
gi\|24986118, gi\|... - gi\|26991083\|ref\|NP_746508.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas puti...	204.0	[0..28]	[247..6]
gi\|70731829, gi\|... - gi\|70731829\|ref\|YP_261571.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas fluo...	204.0	[0..10]	[246..13]
gi\|94413584, gi\|... - gi\|94413584\|ref\|ZP_01293463.1\| hypothetical protein PaerP_01004600 [Pseudomonas aeruginosa PA7], gi\|...	202.0	[0..17]	[247..2]
gi\|23092309 - gi\|23092309\|gb\|AAN08634.1\| FlgA [Aeromonas hydrophila]	202.0	[0..7]	[248..109]
gi\|77460475, gi\|... - gi\|77460475\|ref\|YP_349982.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas fluo...	202.0	[0..19]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGKQLAKGW SVMRAAAMAL IACMMCIGVA FATTGTQVVK EAGIRAVVAE YVRERTAGLG  60
   61 VETEIRKMAP IGDLKLPAGT VSYEVQAPRS WEGWGRANLA LIVRVDDR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQRNIPVTVD VEALADAVVA AHPLARGDII TSDDVTVQKR DISSVNGRVY RSIDEVVGKR  60
   61 VKNAVRANTP LSGASIEKVP LVKSGQLVTI IAESPALRLT ATGKARGNGA EGDIIKVQNM 120
  121 GSLKEIPARV IDVGTVQVDF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.76
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits