YRC Public Data Repository - Protein Structure Prediction

Protein:	BIOC_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIOC_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|90324431, gi\|... - gi\|90414523\|ref\|ZP_01222498.1\| putative biotin synthesis protein BioC [Photobacterium profundum 3TCK...	180.0	[0..2]	[264..23]
gi\|46913930, gi\|... - gi\|54309494\|ref\|YP_130514.1\| putative biotin synthesis protein BioC [Photobacterium profundum SS9], ...	178.0	[0..2]	[264..23]
gi\|28806102, gi\|... - gi\|28897889\|ref\|NP_797494.1\| biotin synthesis protein BioC [Vibrio parahaemolyticus RIMD 2210633], g... gi\|28806102 - gi\|28806102\|dbj\|BAC59378.1\| biotin synthesis protein BioC [Vibrio parahaemolyticus RIMD 2210633] gi\|149748333, gi... - gi\|153838278\|ref\|ZP_01990945.1\| biotin biosynthesis protein BioC [Vibrio parahaemolyticus AQ3810], g...	176.0	[0..2]	[266..14]
gi\|90331572, gi\|... - gi\|90416819\|ref\|ZP_01224749.1\| probable biotin synthesis protein BioC [marine gamma proteobacterium ... gi\|90416819\|ref\|... - probable biotin synthesis protein BioC [marine gamma proteobacterium HTCC2207]	176.0	[0..2]	[267..276]
gi\|78364606, gi\|... - gi\|78486320\|ref\|YP_392245.1\| biotin biosynthesis protein BioC [Thiomicrospira crunogena XCL-2], gi\|7...	175.0	[0..2]	[266..4]
gi\|88935842, gi\|... - gi\|88935842\|ref\|ZP_01141466.1\| biotin synthesis protein, putative [Geobacter uraniumreducens Rf4], g...	170.0	[0..2]	[267..5]
gi\|91189491, gi\|... - gi\|91226050\|ref\|ZP_01260977.1\| biotin synthesis protein BioC [Vibrio alginolyticus 12G01], gi\|911894...	170.0	[0..2]	[266..19]
gi\|86147107, gi\|... - gi\|86147107\|ref\|ZP_01065424.1\| biotin synthesis protein BioC [Vibrio sp. MED222], gi\|85835172\|gb\|EAQ...	168.0	[0..2]	[266..13]
gi\|84394183, gi\|... - gi\|84394183\|ref\|ZP_00992914.1\| biotin synthesis protein BioC [Vibrio splendidus 12B01], gi\|84375203\|...	167.0	[0..2]	[266..13]
gi\|151937315, gi... - gi\|75854508\|ref\|ZP_00762197.1\| COG0500: SAM-dependent methyltransferases [Vibrio sp. Ex25], gi\|25423...	166.0	[0..3]	[266..15]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDRRKVRNA FHRGAADYDA YAAVQKRVME RILSLLFAEG VEPARILDVG AGTGALALRL  60
   61 ADRYPSAAIT CVDLAHGMAR QARDNLGRTM ERLVAVADAE HLPLRDGVFD LVVSTSTFQW 120
  121 LTTLDRAFAE ARRVLADDGL FAFALFGDGT FKELKASYRA ALHSVPRGGR DRTHRFFTRD 180
  181 EVRAALARAG FRSVEVFDED EVEYHPDVPA FLRSVKRIGA GNASPVAGRG LSGRRVMETM 240
  241 MRTYAERFGG ADGIPATYTV VYGVGKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.221849
Match:	2p35A
Description:	No description for 2p35A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits