YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997696, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997696, gi|....

Description	E-value	Query Range	Subject Range
IHFB_RHORT - Integration host factor subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 4...	125.0	[0..1]	[96..1]
gi\|111279809, gi... - gi\|111619683\|ref\|ZP_01406689.1\| Histone-like bacterial DNA-binding protein [Acidovorax avenae subsp....	123.0	[0..1]	[92..7]
IHFB_SACD2 - Integration host factor subunit beta OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 170...	123.0	[0..1]	[92..1]
IHFB_METCA - Integration host factor subunit beta OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / ... IHFB_METCA - Integration host factor subunit beta OS=Methylococcus capsulatus GN=ihfB PE=3 SV=1	123.0	[0..1]	[94..1]
gi\|76882033, gi\|... - gi\|77163719\|ref\|YP_342244.1\| integration host factor, beta subunit [Nitrosococcus oceani ATCC 19707]...	123.0	[0..1]	[95..18]
IHFB_RHOPA - Integration host factor subunit beta OS=Rhodopseudomonas palustris GN=ihfB PE=3 SV=1 ihfB - ihfB integration host factor beta chain 73388:73702 forward MW:11674 IHFB_RHOPT - Integration host factor subunit beta OS=Rhodopseudomonas palustris (strain TIE-1) GN=ihfB PE=3 SV=1	123.0	[0..1]	[96..1]
gi\|110592955, gi... - gi\|121594811\|ref\|YP_986707.1\| integration host factor, beta subunit [Acidovorax sp. JS42], gi\|120606... gi\|222110590, gi... - gi\|222110590\|ref\|YP_002552854.1\| integration host factor, beta subunit [Diaphorobacter sp. TPSY], gi...	123.0	[0..1]	[92..1]
IHFB_HALHL - Integration host factor subunit beta OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ihfB PE=3...	122.0	[0..1]	[91..1]
IHFB_HAHCH - Integration host factor subunit beta OS=Hahella chejuensis (strain KCTC 2396) GN=ihfB PE=3 SV=1	122.0	[0..1]	[91..1]
IHFB_ALKEH - Integration host factor subunit beta OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 ...	122.0	[0..1]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSELVEML AEKNSWLTRK DSEMVVNIVF DSIADALKSG EKVEIRGFGS FTVRERGARE  60
   61 ARNPKSGAIV KIPAKKTPFF KTGKELRERV NHENAD

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Detection Method:	PSI-BLAST
Confidence:	26.221849
Match:	1hueA
Description:	HU protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA binding	5.25387001942839	bayes_pls_golite062009
nucleic acid binding	5.15205953864352	bayes_pls_golite062009
binding	3.99545980559645	bayes_pls_golite062009
transcription regulator activity	1.74311685689448	bayes_pls_golite062009
transcription activator activity	0.38454381783388	bayes_pls_golite062009
protein binding	0.262917207132993	bayes_pls_golite062009
transcription repressor activity	0.176747764275359	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: