YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984295, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984295, gi|....

Description	E-value	Query Range	Subject Range
gi\|17933427 - gi\|17933427\|gb\|AAL48287.1\|AF452495_1 aminoimidazole ribonucleotide carboxylase [Vigna unguiculata]	236.0	[0..17]	[179..465]
PURE_THEMA - N5-carboxyaminoimidazole ribonucleotide mutase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DS... gi\|148269614, gi... - gi\|148269614\|ref\|YP_001244074.1\| phosphoribosylaminoimidazole carboxylase, catalytic subunit [Thermo... gi\|214040189, gi... - gi\|254485175\|ref\|ZP_05098389.1\| phosphoribosylaminoimidazole carboxylase, catalytic subunit [Marinit... gi\|170288290, gi... - gi\|170288290\|ref\|YP_001738528.1\| phosphoribosylaminoimidazole carboxylase, catalytic subunit [Thermo... PUR6_THEMA, PURE... - N5-carboxyaminoimidazole ribonucleotide mutase OS=Thermotoga maritima GN=purE PE=1 SV=1, Phosphoribo...	234.0	[0..18]	[181..2]
gi\|34811258 - gi\|34811258\|pdb\|1O4V\|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Mutase Pure (Tm044...	234.0	[0..18]	[181..14]
PUR6_CANGA - Phosphoribosylaminoimidazole carboxylase OS=Candida glabrata GN=ADE2 PE=3 SV=2 PUR6_CANGA - Phosphoribosylaminoimidazole carboxylase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 ...	233.0	[0..16]	[179..400]
gi\|18976799, gi\|... - gi\|18976799\|ref\|NP_578156.1\| phosphoribosylaminoimidazole carboxylase catalytic subunit [Pyrococcus ...	232.0	[0..18]	[181..2]
PURE_AQUAE - N5-carboxyaminoimidazole ribonucleotide mutase OS=Aquifex aeolicus (strain VF5) GN=purE PE=3 SV=1 PUR6_AQUAE, PURE... - N5-carboxyaminoimidazole ribonucleotide mutase OS=Aquifex aeolicus GN=purE PE=3 SV=1, Phosphoribosyl...	231.0	[0..16]	[178..1]
gi\|3342244 - gi\|3342244\|gb\|AAC27548.1\| aminoimidazole ribonucleotide carboxylase [Candida glabrata]	231.0	[0..16]	[179..400]
PUR6_PYRHO - Phosphoribosylaminoimidazole carboxylase catalytic subunit OS=Pyrococcus horikoshii GN=purE PE=3 SV=... PURE_PYRHO - N5-carboxyaminoimidazole ribonucleotide mutase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12...	230.0	[0..12]	[179..4]
PUR6_SCHOC - Phosphoribosylaminoimidazole carboxylase OS=Schwanniomyces occidentalis GN=ADE2 PE=3 SV=1	230.0	[0..14]	[179..389]
gi\|115435108, gi... - gi\|66274576\|dbj\|BAD98622.1\| putative phosphoribosylaminoimidazole carboxylase, chloroplast precursor...	229.0	[0..17]	[179..458]

Back

Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVETSSAP GTLADRSPLV GILTGSPNDL PTVVKVRDTL TELGIPSEIV VASAHRTPDK  60
   61 VLAYLDRAHK EGVQVLIGCA GVAAHLAGVI AGHTRLPVIG LPLGNGPLSG MDSLLSTVQM 120
  121 PPGVPVATVA IDGSRNAAML AARILALKYP EIDKALEEAA RKERERYDLT ADEALAKLTS 180
  181 CVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.045757
Match:	1o4vA
Description:	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoribosylaminoimidazole carboxylase activity	4.97575664656059	bayes_pls_golite062009
carboxy-lyase activity	3.17413716767835	bayes_pls_golite062009
catalytic activity	2.3180274203618	bayes_pls_golite062009
carbon-carbon lyase activity	1.37437415555436	bayes_pls_golite062009
lyase activity	1.35010010589283	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: