YRC Public Data Repository - Protein Structure Prediction

Protein:	AROQ_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROQ_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|68559799, gi\|... - gi\|94311994\|ref\|YP_585204.1\| 3-dehydroquinate dehydratase [Ralstonia metallidurans CH34], gi\|9335584...	239.0	[0..2]	[150..15]
gi\|83719706, gi\|... - gi\|83719706\|ref\|YP_441711.1\| 3-dehydroquinate dehydratase [Burkholderia thailandensis E264], gi\|8365...	237.0	[0..2]	[150..60]
gi\|76809110, gi\|... - gi\|76809110\|ref\|YP_334870.1\| 3-dehydroquinate dehydratase [Burkholderia pseudomallei 1710b], gi\|7657...	232.0	[0..2]	[150..60]
gi\|46143753 - gi\|46143753\|ref\|ZP_00204566.1\| COG0757: 3-dehydroquinate dehydratase II [Actinobacillus pleuropneumo... AROQ_ACTP2 - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=aroQ PE=... AROQ_ACTPJ - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=aroQ PE=... AROQ_ACTP7 - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=aroQ PE=... AROQ_ACTPL - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae GN=aroQ PE=1 SV=1	232.0	[0..2]	[144..3]
AROQ_GEOMG - 3-dehydroquinate dehydratase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=...	232.0	[0..1]	[149..1]
gi\|68348474, gi\|... - gi\|70734175\|ref\|YP_257815.1\| 3-dehydroquinate dehydratase [Pseudomonas fluorescens Pf-5], gi\|6834847...	231.0	[0..3]	[146..52]
gi\|1084142 - gi\|1084142\|pir\|\|S41538 3-dehydroquinate dehydratase (EC 4.2.1.10) - Actinobacillus pleuropneumoniae	230.0	[0..2]	[144..3]
AROQ_HISS2 - 3-dehydroquinate dehydratase OS=Histophilus somni (strain 2336) GN=aroQ PE=3 SV=1 AROQ_HAES1 - 3-dehydroquinate dehydratase OS=Haemophilus somnus (strain 129Pt) GN=aroQ PE=3 SV=1	229.0	[0..2]	[144..6]
gi\|109698700, gi... - gi\|76792139\|ref\|ZP_00774641.1\| Dehydroquinase, class II [Pseudoalteromonas atlantica T6c], gi\|765925...	229.0	[0..1]	[146..15]
gi\|88860979, gi\|... - gi\|88860979\|ref\|ZP_01135614.1\| 3-dehydroquinate dehydratase (3-dehydroquinase) (Type II DHQase) [Pse...	228.0	[0..2]	[143..6]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILVVHGPN LNMLGTREPG IYGTLTLDRI NESLVALADE LGCTISPFQS NSEGALVDAI  60
   61 QAAAGTCDGI LINPAAYTHT SVAIRDALAA VALPVVEVHL SNIHRREEFR SHSFVAAVAV 120
  121 GQITGFGADS YLLGLRALFT HIEKGIVTKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	1uqrA
Description:	Type II 3-dehydroquinate dehydratase (DHQase) from Actinobacillus pleuropneumoniae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-dehydroquinate dehydratase activity	4.89182009956779	bayes_pls_golite062009
catalytic activity	2.05174935916901	bayes_pls_golite062009
lyase activity	1.8611664916998	bayes_pls_golite062009
carbon-oxygen lyase activity	1.85854553303143	bayes_pls_golite062009
hydro-lyase activity	1.7760166106171	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: