YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983960, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983960, gi|....

Description	E-value	Query Range	Subject Range
gi\|17942753 - gi\|17942753\|pdb\|1H5S\|A Chain A, Thymidylyltransferase Complexed With Tmp	197.0	[0..1]	[234..1]
gi\|71906877, gi\|... - gi\|71906877\|ref\|YP_284464.1\| glucose-1-phosphate thymidylyltransferase [Dechloromonas aromatica RCB]...	197.0	[0..1]	[234..1]
gi\|34105319, gi\|... - gi\|34499467\|ref\|NP_903682.1\| glucose-1-phosphate thymidylyltransferase [Chromobacterium violaceum AT...	197.0	[0..3]	[234..8]
gi\|21466154\|pdb\|... - Chain D, Thymidylyltransferase Complexed With Thimidine And Glucose-1-Phospate, Chain C, Thymidylylt... RMA1_ECOLI, RMLA... - Glucose-1-phosphate thymidylyltransferase 1 (EC 2.7.7.24) (dTDP-glucose synthase 1) (dTDP-glucose py... gi\|170081669, gi... - gi\|170081669\|ref\|YP_001730989.1\| glucose-1-phosphate thymidylyltransferase [Escherichia coli str. K-... EG11978 - glucose-1-phosphate thymidylyltransferase / Glucose-1-phosphate thymidylyltransferase 1; TDP-glucose... gi\|89108859, gi\|... - gi\|89108859\|ref\|AP_002639.1\| glucose-1-phosphate thymidylyltransferase [Escherichia coli str. K-12 s... gi\|238901229, gi... - gi\|238901229\|ref\|YP_002927025.1\| glucose-1-phosphate thymidylyltransferase [Escherichia coli BW2952]... EG11978 - glucose-1-phosphate thymidylyltransferase / Glucose-1-phosphate thymidylyltransferase 1; TDP-glucose...	197.0	[0..1]	[234..1]
gi\|197361929, gi... - gi\|197361929\|ref\|YP_002141566.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica ... gi\|56127258, gi\|... - gi\|56413001\|ref\|YP_150076.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica sero...	195.0	[0..1]	[234..1]
gi\|26988514, gi\|... - gi\|26988514\|ref\|NP_743939.1\| glucose-1-phosphate thymidylyltransferase [Pseudomonas putida KT2440], ...	194.0	[0..3]	[234..1]
gi\|25288650, gi\|... - gi\|25288650\|pir\|\|AD0767 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) - Salmonella enteric... gi\|213650449 - gi\|213650449\|ref\|ZP_03380502.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica s... gi\|29136903, gi\|... - gi\|29141277\|ref\|NP_804619.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica sero... gi\|213425547 - gi\|213425547\|ref\|ZP_03358297.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica s... gi\|214001793 - gi\|214001793\|ref\|ZP_03412528.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica s... gi\|16761027 - gi\|16761027\|ref\|NP_456644.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica sero... gi\|213052827 - gi\|213052827\|ref\|ZP_03345705.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica s...	194.0	[0..1]	[234..1]
RMLA1_SHIFL - Glucose-1-phosphate thymidylyltransferase 1 OS=Shigella flexneri GN=rfbA PE=3 SV=2 gi\|24113424, gi\|... - gi\|24113424\|ref\|NP_707934.1\| glucose-1-phosphate thymidylyltransferase [Shigella flexneri 2a str. 30... gi\|30063490, gi\|... - gi\|30063490\|ref\|NP_837661.1\| glucose-1-phosphate thymidylyltransferase [Shigella flexneri 2a str. 24...	194.0	[0..3]	[234..2]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDACIAVIP ARGGSKRVPG KNIKPLMGKP LIAYTVEAAA DSGLFERIVV STDCQEIAEV  60
   61 AQRHGAEVPF LREASLADDI TPVSAATVDM LVKLDPDGST YGFVCQMMPN CPLKTSADVR 120
  121 DSHRQFLESG ADSQLSVVRY GWQNPWWAMR RDDSFRLDPL FREAMTQRSQ DLPELFCPTG 180
  181 AIWWAKADVL RREGTYHIPA KTGWEIPWQR GLDIDTYDDW DMAEILFRLD SAGGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	1h5sA
Description:	RmlA (RfbA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.25720704697246	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.04393180556087	bayes_pls_golite062009
transferase activity	1.67251862595728	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.51711005399931	bayes_pls_golite062009
cytidylyltransferase activity	1.46439247968206	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	1.21894113759929	bayes_pls_golite062009
3-deoxy-manno-octulosonate cytidylyltransferase activity	0.83115346830439	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.696745721981411	bayes_pls_golite062009
nucleotidyltransferase activity	0.67147527259372	bayes_pls_golite062009
uridylyltransferase activity	0.54930147038803	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	0.48277064848483	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.38929738612511	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.280335197569099	bayes_pls_golite062009
glucose-1-phosphate thymidylyltransferase activity	0.204810937394121	bayes_pls_golite062009
guanylyltransferase activity	0.14847697203788	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	0.10541627748542	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: