YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983848, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	67 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983848, gi|....

Description	E-value	Query Range	Subject Range
NUOHI_NOCFA - NADH-quinone oxidoreductase subunits H/I OS=Nocardia farcinica GN=nuoH/I PE=3 SV=1 NUOHI_NOCFA - NADH-quinone oxidoreductase subunits H/I OS=Nocardia farcinica (strain IFM 10152) GN=nuoH/I PE=3 SV=...	85.0	[0..9]	[66..463]
gi\|14324457 - gi\|14324457\|dbj\|BAB59385.1\| formate hydrogenase [Thermoplasma volcanium GSS1]	81.0	[0..2]	[67..141]
gi\|77416915 - gi\|77416915\|gb\|ABA81853.1\| NADH:ubiquinone oxidoreductase-like [Solanum tuberosum]	81.0	[0..1]	[64..120]
NDS8A_ARATH - NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial OS=Arabidopsis thaliana GN=At...	81.0	[0..1]	[64..113]
gi\|78217717, gi\|... - gi\|78355312\|ref\|YP_386761.1\| iron-sulfur cluster-binding protein, putative [Desulfovibrio desulfuric...	81.0	[0..4]	[67..285]
gi\|134115557, gi... - gi\|50256118\|gb\|EAL18845.1\| hypothetical protein CNBI1060 [Cryptococcus neoformans var. neoformans B-... gi\|58261400, gi\|... - gi\|58261400\|ref\|XP_568110.1\| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21], g...	81.0	[0..1]	[64..126]
NDUS8_TOBAC - NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Nicotiana tabacum PE=2 SV=1	81.0	[0..1]	[64..121]
gi\|5458668, gi\|1... - gi\|5458668\|emb\|CAB50155.1\| ABC transporter ATP-binding protein [Pyrococcus abyssi GE5], gi\|14521449\|... gi\|5458668, gi\|7... - pir\|\|F75032 rnase l inhibitor PAB0824 - Pyrococcus abyssi (strain Orsay), gi\|5458668\|emb\|CAB50155.1\|...	80.0	[0..1]	[66..5]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIEIDESR CKGCGLCTLA CSRKLIVMSS TINKYGYVTA VMTSQDQCTG CALCAEICPD  60
   61 VAIKVYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.39794
Match:	1b0pA
Description:	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I; Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI; Pyruvate-ferredoxin oxidoreductase, PFOR, domain II; Pyruvate-ferredoxin oxidoreductase, PFOR, domain III; Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	1.96335238768634	bayes_pls_golite062009
electron carrier activity	1.80821147571665	bayes_pls_golite062009
NADH dehydrogenase activity	1.52708302196048	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	1.34194069643424	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	1.01522839124481	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	1.00909748207872	bayes_pls_golite062009
catalytic activity	0.858923918006343	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.62952479827273	bayes_pls_golite062009
formate dehydrogenase activity	0.13956405004608	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: