YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996888, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996888, gi|....

Description	E-value	Query Range	Subject Range
gi\|110599104, gi... - gi\|222055726\|ref\|YP_002538088.1\| Dolichyl-phosphate beta-D-mannosyltransferase [Geobacter sp. FRC-32...	166.0	[0..1]	[234..1]
gi\|66866942, gi\|... - gi\|66967274\|ref\|ZP_00414816.1\| Dolichyl-phosphate beta-D-mannosyltransferase [Arthrobacter sp. FB24]...	165.0	[0..1]	[236..1]
gi\|68198785, gi\|... - gi\|68233573\|ref\|ZP_00572689.1\| Apolipoprotein N-acyltransferase [Frankia sp. EAN1pec], gi\|68198785\|g...	164.0	[0..2]	[227..605]
gi\|88915923, gi\|... - gi\|88937339\|ref\|ZP_01142912.1\| glycosyl transferase, group 2 family protein [Geobacter uraniumreduce...	163.0	[0..1]	[238..1]
gi\|71741517, gi\|... - gi\|71837971\|ref\|ZP_00677733.1\| Dolichyl-phosphate beta-D-mannosyltransferase [Pelobacter propionicus...	161.0	[0..1]	[239..1]
gi\|78223077, gi\|... - gi\|78223077\|ref\|YP_384824.1\| glycosyl transferase family protein [Geobacter metallireducens GS-15], ...	161.0	[0..1]	[239..1]
gi\|6468712, gi\|2... - gi\|6468712\|emb\|CAB61668.1\| putative glycosyl transferase. [Streptomyces coelicolor A3(2)], gi\|212199...	159.0	[0..5]	[225..25]
gi\|39575272, gi\|... - gi\|42523067\|ref\|NP_968447.1\| putative glycosyl transferase [Bdellovibrio bacteriovorus HD100], gi\|39...	158.0	[0..1]	[231..1]
gi\|115377104, gi... - gi\|115377104\|ref\|ZP_01464319.1\| glycosyl transferase, group 2 family protein, putative [Stigmatella ...	158.0	[0..5]	[230..6]
gi\|108762457, gi... - gi\|108762457\|ref\|YP_632881.1\| glycosyl transferase, group 2 family protein [Myxococcus xanthus DK 16...	157.0	[0..5]	[230..6]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTVVVIPTY NERDTIERLI NDVLAQDKDI HVLVVDDNSP DGTGEIVDRL SEGKGRVHVL  60
   61 HRPGKMGLGS AYRQGFAAAL AMDADFIVEM DADYSHDPAT LPRFLEAMEG CDLVIGSRYL 120
  121 NGISVVNWPL RRLMLSYFAN WYTRLITGLR IMDCTSGFKC FRRRVIESID MSTIRSDGYS 180
  181 FQIEMNYRCV EKGFQVREIP IIFIDRRSGS SKMSKKIVRE AVFMVWKLKL GSVFGALFR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1xhbA
Description:	The Crystal Structure of UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase-T1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
mannosyltransferase activity	3.87594044828967	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.70047942699289	bayes_pls_golite062009
transferase activity	2.62166586999833	bayes_pls_golite062009
UDP-glycosyltransferase activity	2.33861720107822	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.01768771829228	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
alpha-1,2-mannosyltransferase activity	1.53617752123292	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	1.33788133706753	bayes_pls_golite062009
nucleotidyltransferase activity	1.31793036737589	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	1.10309252319727	bayes_pls_golite062009
cytidylyltransferase activity	0.983416157001861	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.897978517422275	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.412018910498896	bayes_pls_golite062009
uridylyltransferase activity	0.321928989676507	bayes_pls_golite062009
glucuronosyltransferase activity	0.287421645469793	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.2363835251362	bayes_pls_golite062009
binding	0.074398891333042	bayes_pls_golite062009
acetylglucosaminyltransferase activity	0.0562130308868509	bayes_pls_golite062009
guanylyltransferase activity	0.0539392112504681	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.0122078907283503	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: