YRC Public Data Repository - Protein Structure Prediction

Protein:	NUSB_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUSB_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|49080752 - gi\|49080752\|gb\|AAT50054.1\| PA4052 [synthetic construct]	147.0	[0..2]	[135..19]
gi\|94417012, gi\|... - gi\|94417012\|ref\|ZP_01296834.1\| hypothetical protein PaerP_01001208 [Pseudomonas aeruginosa PA7], gi\|...	146.0	[0..2]	[135..19]
NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C /... gi\|46164642, gi\|... - gi\|46164642\|ref\|ZP_00205138.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa UCB... gi\|84325185, gi\|... - gi\|84325185\|ref\|ZP_00973225.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa 219... gi\|107103566 - gi\|107103566\|ref\|ZP_01367484.1\| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2] gi\|218889667, gi... - gi\|218889667\|ref\|YP_002438531.1\| transcription antitermination protein NusB [Pseudomonas aeruginosa ... NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa GN=nusB PE=3 SV=1	146.0	[0..2]	[135..19]
gi\|126168872, gi... - gi\|84319131\|ref\|ZP_00967534.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa C37...	145.0	[0..2]	[135..19]
gi\|88925497, gi\|... - gi\|88944826\|ref\|ZP_01148049.1\| Fmu, rRNA SAM-dependent methyltransferase:NusB antitermination factor...	145.0	[0..7]	[134..6]
gi\|51856176, gi\|... - gi\|51892487\|ref\|YP_075178.1\| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM 14863], ...	144.0	[0..2]	[135..7]
NUSB_GEOMG - N utilization substance protein B homolog OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / ...	142.0	[0..1]	[138..1]
NUSB_LEPIN - N utilization substance protein B homolog OS=Leptospira interrogans GN=nusB PE=3 SV=1 NUSB_LEPIN - N utilization substance protein B homolog OS=Leptospira interrogans serogroup Icterohaemorrhagiae se... NUSB_LEPIC - N utilization substance protein B homolog OS=Leptospira interrogans serogroup Icterohaemorrhagiae se... NUSB_LEPIC - N utilization substance protein B homolog OS=Leptospira interrogans serogroup Icterohaemorrhagiae se...	142.0	[0..1]	[134..1]
NUSB_PSE14 - N utilization substance protein B homolog OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A /...	142.0	[0..2]	[136..25]
NUSB_BACLD - N utilization substance protein B homolog OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JC...	142.0	[0..3]	[135..2]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGARRLGREL ALQMLYSRDY AAGEAAPLLE LVLDESEPGA AAGRSFADDL VRGVLEHRQE  60
   61 IDTAITGASK NWSIGRMARV DLSILRMAMY ELLFRSDIPK NVTINEAIEV AKKFGTEDSP 120
  121 AFINGILDEI ASTLPDKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.30103
Match:	1ey1A
Description:	Antitermination factor NusB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.08625510047476	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: