YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983409, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983409, gi|....

Description	E-value	Query Range	Subject Range
gi\|76165552, gi\|... - gi\|76259651\|ref\|ZP_00767298.1\| Anti-sigma factor antagonist [Chloroflexus aurantiacus J-10-fl], gi\|7...	102.0	[0..1]	[110..48]
gi\|15895575, gi\|... - gi\|15895575\|ref\|NP_348924.1\| anti-anti-sigma factor (antagonist of SpoIIAB) [Clostridium acetobutyli... gi\|25299040 - pir\|\|E97184 anti-anti-sigma factor (antagonist of SpoIIAB) [imported] - Clostridium acetobutylicum	102.0	[0..1]	[110..1]
gi\|77545553, gi\|... - gi\|77919470\|ref\|YP_357285.1\| anti- anti-sigma regulatory factor [Pelobacter carbinolicus DSM 2380], ...	100.0	[0..1]	[111..1]
gi\|88931500, gi\|... - gi\|88931500\|ref\|ZP_01137194.1\| Anti-sigma factor antagonist [Acidothermus cellulolyticus 11B], gi\|88...	100.0	[0..1]	[110..1]
gi\|111153440, gi... - gi\|111225908\|ref\|YP_716702.1\| anti-sigma-B factor antagonist (anti-anti-sigma-B factor) [Frankia aln...	99.0	[0..1]	[110..3]
gi\|86569839, gi\|... - gi\|86742977\|ref\|YP_483377.1\| anti-sigma-factor antagonist domain-containing protein [Frankia sp. CcI...	99.0	[0..1]	[110..3]
gi\|159897947, gi... - gi\|159897947\|ref\|YP_001544194.1\| anti-sigma-factor antagonist [Herpetosiphon aurantiacus ATCC 23779]...	99.0	[0..6]	[110..141]
gi\|158312176, gi... - gi\|68229180\|ref\|ZP_00568377.1\| Anti-sigma factor antagonist [Frankia sp. EAN1pec], gi\|68203136\|gb\|EA...	99.0	[0..1]	[110..1]
gi\|60687275 - gi\|60687275\|gb\|AAX35717.1\| BldG [Streptomyces clavuligerus] gi\|197771640, gi... - gi\|254388760\|ref\|ZP_05003993.1\| anti-sigma factor antagonist [Streptomyces clavuligerus ATCC 27064],...	99.0	[0..1]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLKIETKND ILIIFVREER LDAHNSGDLK TKMQELFTSG TKNILVDLNE VRFIDSSGLG  60
   61 ALVSGFKNAI SHQGSLKLAS LQPQVKSMFE LTRLHRVFEI FGSTAEAVEN F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1th8B
Description:	Crystal Structures of the ADP and ATP bound forms of the Bacillus Anti-sigma factor SpoIIAB in complex with the Anti-anti-sigma SpoIIAA: inhibitory complex with ADP, crystal form II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.51984028488182	bayes_pls_golite062009
protein binding	0.99113615143823	bayes_pls_golite062009
transcription regulator activity	0.893093767470901	bayes_pls_golite062009
antisigma factor binding	0.52065892308738	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: