YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983271, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983271, gi|....

Description	E-value	Query Range	Subject Range
gi\|110801119, gi... - gi\|110801119\|ref\|YP_695076.1\| DNA-binding response regulator [Clostridium perfringens ATCC 13124], g...	164.0	[0..1]	[120..1]
gi\|18144301, gi\|... - gi\|18309624\|ref\|NP_561558.1\| DNA-binding response regulator [Clostridium perfringens str. 13], gi\|18...	164.0	[0..1]	[120..1]
gi\|110682378, gi... - gi\|110801877\|ref\|YP_697936.1\| DNA-binding response regulator [Clostridium perfringens SM101], gi\|110...	163.0	[0..1]	[120..1]
gi\|76261393, gi\|... - gi\|76261393\|ref\|ZP_00769005.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter... gi\|222448108, gi... - gi\|222524229\|ref\|YP_002568700.1\| two component transcriptional regulator, winged helix family [Chlor...	162.0	[0..1]	[120..1]
gi\|207090866 - gi\|207090866\|gb\|EDZ68137.1\| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus... gi\|224411212, gi... - gi\|254434533\|ref\|ZP_05048041.1\| phosphate regulon transcriptional regulatory protein PhoB [Nitrosoco... gi\|76884178, gi\|... - gi\|77165864\|ref\|YP_344389.1\| phosphate regulon transcriptional regulatory protein phoB [Nitrosococcu...	161.0	[0..1]	[120..1]
gi\|85859021, gi\|... - gi\|85859021\|ref\|YP_461223.1\| response regulator [Syntrophus aciditrophicus SB], gi\|85722112\|gb\|ABC77...	161.0	[0..3]	[120..15]
gi\|98660941 - gi\|98660941\|dbj\|GAA01931.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	161.0	[0..3]	[120..5]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	161.0	[0..1]	[120..1]
gi\|208742147 - gi\|208742147\|ref\|YP_002267599.1\| two component transcriptional regulator [Bacillus cereus] gi\|47565258, gi\|... - gi\|47565258\|ref\|ZP_00236300.1\| DNA-binding response regulator VicR [Bacillus cereus G9241], gi\|47557...	160.0	[0..1]	[117..1]

Back

Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTIMTVDD SASVRQMVSF TLKQNGYDVV EAVDGKDALA KLAGTRVDMV ITDLNMPNLD  60
   61 GIGLIKGVRA NPTYRFTPIV MLTTESQESR KQEGKAAGAT GWIVKPFKPE QLVAVVKKVL 120
  121 G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.522879
Match:	1zesA
Description:	BeF3- activated PhoB receiver domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
two-component response regulator activity	7.02872640261738	bayes_pls_golite062009
signal transducer activity	4.51666042720644	bayes_pls_golite062009
molecular transducer activity	4.51666042720644	bayes_pls_golite062009
transcription regulator activity	3.44888100104099	bayes_pls_golite062009
protein histidine kinase activity	2.35011582062573	bayes_pls_golite062009
two-component sensor activity	2.32303301074957	bayes_pls_golite062009
phosphotransferase activity, nitrogenous group as acceptor	2.28838869071567	bayes_pls_golite062009
binding	1.22427537074115	bayes_pls_golite062009
DNA binding	1.11037597107903	bayes_pls_golite062009
nucleic acid binding	1.05519146337499	bayes_pls_golite062009
protein kinase activity	0.73223373303195	bayes_pls_golite062009
transcription factor activity	0.62886970109503	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.483665536682372	bayes_pls_golite062009
kinase activity	0.354820297776097	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.126415734125785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: