YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996369, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996369, gi|....

Description	E-value	Query Range	Subject Range
gi\|88918906, gi\|... - gi\|88934448\|ref\|ZP_01140091.1\| Peptidase S26A, signal peptidase I [Geobacter uraniumreducens Rf4], g...	225.0	[0..8]	[222..2]
gi\|71741591, gi\|... - gi\|71838045\|ref\|ZP_00677807.1\| Signal peptidase I [Pelobacter propionicus DSM 2379], gi\|71741591\|gb\|...	224.0	[0..3]	[221..2]
gi\|53758236, gi\|... - gi\|53804475\|ref\|YP_113922.1\| signal peptidase I [Methylococcus capsulatus str. Bath], gi\|53758236\|gb...	219.0	[0..23]	[221..39]
gi\|48833002, gi\|... - gi\|69257745\|ref\|ZP_00606700.1\| Signal peptidase I [Magnetococcus sp. MC-1], gi\|68246803\|gb\|EAN28896....	219.0	[0..23]	[222..67]
gi\|85860052, gi\|... - gi\|85860052\|ref\|YP_462254.1\| signal peptidase I [Syntrophus aciditrophicus SB], gi\|85723143\|gb\|ABC78...	218.0	[0..22]	[221..3]
gi\|120603303, gi... - gi\|120603303\|ref\|YP_967703.1\| signal peptidase I [Desulfovibrio vulgaris subsp. vulgaris DP4], gi\|12... gi\|241907381, gi... - gi\|241907381\|ref\|ZP_04791960.1\| signal peptidase I [Desulfovibrio vulgaris RCH1], gi\|241880367\|gb\|EE... gi\|46579117, gi\|... - gi\|46579117\|ref\|YP_009925.1\| signal peptidase I [Desulfovibrio vulgaris subsp. vulgaris str. Hildenb...	218.0	[0..21]	[221..1]
gi\|116697047, gi... - gi\|71543954\|ref\|ZP_00665013.1\| Signal peptidase I [Syntrophobacter fumaroxidans MPOB], gi\|71489969\|g...	216.0	[0..12]	[221..3]
gi\|254434712, gi... - gi\|254434712\|ref\|ZP_05048220.1\| signal peptidase I [Nitrosococcus oceani AFC27], gi\|224411391\|ref\|YP... gi\|76884232, gi\|... - gi\|77165918\|ref\|YP_344443.1\| peptidase S26A, signal peptidase I [Nitrosococcus oceani ATCC 19707], g... gi\|207091045 - gi\|207091045\|gb\|EDZ68316.1\| signal peptidase I [Nitrosococcus oceani AFC27]	216.0	[0..19]	[222..47]
gi\|33152643, gi\|... - gi\|33152643\|ref\|NP_873996.1\| SPase I [Haemophilus ducreyi 35000HP], gi\|33148867\|gb\|AAP96385.1\| signa...	215.0	[0..1]	[222..59]
gi\|68525801, gi\|... - gi\|94311356\|ref\|YP_584566.1\| signal peptidase I [Ralstonia metallidurans CH34], gi\|93355208\|gb\|ABF09...	214.0	[0..2]	[220..46]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYKETQYGQ STPSEQAAEP VKKKHIVREY AESIIIAVIL ALIIRTFVVQ AFKIPSGSME  60
   61 DTLAIGDHIL VSKFIYGTKI PFVDGRYLKI RDPKRGDVIV FEYPEDPSKD FIKRVIGLPG 120
  121 DTIQVVQKQV FINGKPFSVP QEVHKEKDVI PAAQNPRDNF GPVTVPENSY FVMGDNRDRS 180
  181 YDSRFWGFVK NSQIKGLAFI KYWSWDREKF RVRWGSIGDI IK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	0.485843348899278	bayes_pls_golite062009
catalytic activity	0.415601732277814	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.237734983138449	bayes_pls_golite062009
hydrolase activity	0.188292586303013	bayes_pls_golite062009
protein binding	0.0579980138351139	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: