YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995915, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995915, gi|....

Description	E-value	Query Range	Subject Range
gi\|124547212, gi... - gi\|124547212\|ref\|ZP_01706159.1\| carbonic anhydrase [Shewanella putrefaciens 200], gi\|124509364\|gb\|EA... gi\|120558793, gi... - gi\|82743458\|ref\|ZP_00906103.1\| Carbonate dehydratase [Shewanella sp. W3-18-1], gi\|82719181\|gb\|EAP541... gi\|77815085, gi\|... - gi\|77815085\|ref\|ZP_00814328.1\| Carbonate dehydratase [Shewanella putrefaciens CN-32], gi\|77809949\|gb...	202.0	[0..12]	[189..1]
gi\|113889061, gi... - gi\|78690890\|ref\|ZP_00855526.1\| Carbonate dehydratase [Shewanella sp. MR-7], gi\|78509731\|gb\|EAP23117....	201.0	[0..12]	[189..1]
gi\|82404653, gi\|... - gi\|82497288\|ref\|ZP_00882844.1\| Carbonate dehydratase [Shewanella sp. MR-4], gi\|82404653\|gb\|EAP45337....	201.0	[0..12]	[189..1]
gi\|126174585, gi... - gi\|68544769\|ref\|ZP_00584374.1\| Carbonate dehydratase [Shewanella baltica OS155], gi\|68517523\|gb\|EAN4... gi\|160875587, gi... - gi\|160875587\|ref\|YP_001554903.1\| carbonate dehydratase [Shewanella baltica OS195], gi\|160861109\|gb\|A...	200.0	[0..12]	[189..1]
gi\|127512787, gi... - gi\|78367243\|ref\|ZP_00837515.1\| Carbonate dehydratase [Shewanella sp. PV-4], gi\|78360734\|gb\|EAP02566....	200.0	[0..12]	[189..1]
SO2474 - carbonic anhydrase family protein gi\|24348485, gi\|... - gi\|24374018\|ref\|NP_718061.1\| carbonic anhydrase family protein [Shewanella oneidensis MR-1], gi\|2434...	198.0	[0..12]	[189..1]
gi\|91793167, gi\|... - gi\|91793167\|ref\|YP_562818.1\| carbonate dehydratase [Shewanella denitrificans OS217], gi\|91715169\|gb\|...	198.0	[0..12]	[189..1]
gi\|78505544, gi\|... - gi\|78686660\|ref\|ZP_00851424.1\| Carbonate dehydratase [Shewanella sp. ANA-3], gi\|78505544\|gb\|EAP19073...	198.0	[0..12]	[189..1]
gi\|85093349 - gi\|85093349\|ref\|XP_959676.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32416722, gi\|... - gi\|32416722\|ref\|XP_328839.1\| hypothetical protein [Neurospora crassa], gi\|28921124\|gb\|EAA30440.1\| hy...	198.0	[0..16]	[188..77]
7924;, 3735.m000... - /numExons=4 /strand=- /begin=243378 /end=245236 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|118378429, gi... - gi\|89304157\|gb\|EAS02145.1\| Carbonic anhydrase family protein [Tetrahymena thermophila SB210], gi\|118...	197.0	[0..13]	[189..38]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLKPVRGN AMTLLDTILD ANRKFVRPGA FPPLAKNPKK QFAIFTCMDT RLVDFLEPAM  60
   61 GIRRGDAKVI KNAGNTIVDP ISGGVIRSLV AAVFMLGVEE IFVIGHRDCG MAAVDSGDLR 120
  121 QRMVARGIDP SVIEAQVPDL AQWMGAFSCP EENVARVTSV IRQNPLIPRD VPVHGLIFCP 180
  181 NDGHLEVIVR GY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1g5cA
Description:	beta-carbonic anhydrase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbonate dehydratase activity	2.96380803089124	bayes_pls_golite062009
catalytic activity	1.85658156053797	bayes_pls_golite062009
carbon-oxygen lyase activity	0.678762427493332	bayes_pls_golite062009
hydro-lyase activity	0.661217808517883	bayes_pls_golite062009
lyase activity	0.656288524484184	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: