YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995718, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995718, gi|....

Description	E-value	Query Range	Subject Range
gi\|17933427 - gi\|17933427\|gb\|AAL48287.1\|AF452495_1 aminoimidazole ribonucleotide carboxylase [Vigna unguiculata]	228.0	[0..3]	[164..465]
PUR6_CANGA - Phosphoribosylaminoimidazole carboxylase OS=Candida glabrata GN=ADE2 PE=3 SV=2 PUR6_CANGA - Phosphoribosylaminoimidazole carboxylase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 ...	224.0	[0..3]	[163..401]
gi\|18976799, gi\|... - gi\|18976799\|ref\|NP_578156.1\| phosphoribosylaminoimidazole carboxylase catalytic subunit [Pyrococcus ...	224.0	[0..4]	[164..2]
gi\|34811258 - gi\|34811258\|pdb\|1O4V\|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Mutase Pure (Tm044...	223.0	[0..4]	[164..14]
PURE_THEMA - N5-carboxyaminoimidazole ribonucleotide mutase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DS... gi\|148269614, gi... - gi\|148269614\|ref\|YP_001244074.1\| phosphoribosylaminoimidazole carboxylase, catalytic subunit [Thermo... gi\|214040189, gi... - gi\|254485175\|ref\|ZP_05098389.1\| phosphoribosylaminoimidazole carboxylase, catalytic subunit [Marinit... gi\|170288290, gi... - gi\|170288290\|ref\|YP_001738528.1\| phosphoribosylaminoimidazole carboxylase, catalytic subunit [Thermo... PUR6_THEMA, PURE... - N5-carboxyaminoimidazole ribonucleotide mutase OS=Thermotoga maritima GN=purE PE=1 SV=1, Phosphoribo...	223.0	[0..4]	[164..2]
PUR6_SCHOC - Phosphoribosylaminoimidazole carboxylase OS=Schwanniomyces occidentalis GN=ADE2 PE=3 SV=1	222.0	[0..2]	[164..391]
PURE_PYRAB - N5-carboxyaminoimidazole ribonucleotide mutase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=purE PE=... PUR6_PYRAB - Phosphoribosylaminoimidazole carboxylase catalytic subunit OS=Pyrococcus abyssi GN=purE PE=3 SV=1	222.0	[0..4]	[165..7]
gi\|110737176, gi... - gi\|42569706\|ref\|NP_181305.2\| phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, p...	221.0	[0..2]	[165..473]
PUR6_PYRHO - Phosphoribosylaminoimidazole carboxylase catalytic subunit OS=Pyrococcus horikoshii GN=purE PE=3 SV=... PURE_PYRHO - N5-carboxyaminoimidazole ribonucleotide mutase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12...	221.0	[0..2]	[164..8]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENPQVLIIM GSDSDVPVME EAAKALDAFG VTWEMRVASA HRSPKKAADL ASNAAARGVK  60
   61 AIIAGAGVAA HLAGVLAAET ILPVIAVPMP GGALNGVDAL YSMVQMPGGI PVATMAIGKA 120
  121 GAKNAGLFAV QILALGDAAM AGRLVEYKAS MAEEVEAKDR ALQVKLGRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	1o4vA
Description:	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoribosylaminoimidazole carboxylase activity	12.126616405613	bayes_pls_golite062009
carboxy-lyase activity	8.23768576957333	bayes_pls_golite062009
catalytic activity	1.94758748334979	bayes_pls_golite062009
carbon-carbon lyase activity	0.735133792277863	bayes_pls_golite062009
lyase activity	0.685887227538264	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: