YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982398, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982398, gi|....

Description	E-value	Query Range	Subject Range
gi\|20091565, gi\|... - gi\|20091565\|ref\|NP_617640.1\| nitroreductase [Methanosarcina acetivorans C2A], gi\|19916724\|gb\|AAM0612...	144.0	[0..1]	[274..4]
gi\|21229411, gi\|... - gi\|21229411\|ref\|NP_635333.1\| ferredoxin [Methanosarcina mazei Go1], gi\|20908005\|gb\|AAM33005.1\| Ferre...	140.0	[0..1]	[274..1]
gi\|73670733, gi\|... - gi\|73670733\|ref\|YP_306748.1\| nitroreductase [Methanosarcina barkeri str. Fusaro], gi\|72397895\|gb\|AAZ...	138.0	[0..1]	[274..2]
gi\|88945918, gi\|... - gi\|88945918\|ref\|ZP_01149057.1\| nitroreductase family protein [Desulfotomaculum reducens MI-1], gi\|88...	137.0	[0..1]	[274..1]
gi\|85858670, gi\|... - gi\|85858670\|ref\|YP_460872.1\| ferridoxin [Syntrophus aciditrophicus SB], gi\|85721761\|gb\|ABC76704.1\| f...	132.0	[0..4]	[274..5]
gi\|78219861, gi\|... - gi\|78357456\|ref\|YP_388905.1\| nitroreductase family protein [Desulfovibrio desulfuricans subsp. desul...	132.0	[0..1]	[273..1]
gi\|120602882, gi... - gi\|120602882\|ref\|YP_967282.1\| nitroreductase [Desulfovibrio vulgaris subsp. vulgaris DP4], gi\|120563... gi\|46579631, gi\|... - gi\|46579631\|ref\|YP_010439.1\| nitroreductase family protein [Desulfovibrio vulgaris subsp. vulgaris s... gi\|241906930, gi... - gi\|241906930\|ref\|ZP_04791511.1\| nitroreductase [Desulfovibrio vulgaris RCH1], gi\|241880743\|gb\|EER801...	129.0	[0..1]	[274..1]
gi\|48845025, gi\|... - gi\|78224188\|ref\|YP_385935.1\| nitroreductase [Geobacter metallireducens GS-15], gi\|78195443\|gb\|ABB332...	128.0	[0..1]	[274..1]
gi\|149902066, gi... - gi\|82746429\|ref\|ZP_00908935.1\| nitroreductase family protein fused to ferredoxin domain [Clostridium...	127.0	[0..1]	[273..1]
gi\|88602815, gi\|... - gi\|88602815\|ref\|YP_502993.1\| nitroreductase [Methanospirillum hungatei JF-1], gi\|88188277\|gb\|ABD4127...	127.0	[0..1]	[274..1]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELIVTDAA CTRCGACVSV CPLRIVELPE GNLPPRFTEE GAGRCIICGH CEAVCPTAAL  60
   61 AVDDPRLDPA VYSPPTAPFA PAELDAYLRM RRSIRHFRPE PVPRETIAGM LDVVRYAPTG 120
  121 SNSQRVKWLI IHDTAEVRRL TGLVVDWLRS QQEGDTHLSR HFNIAAMIRS WRKGNDPICR 180
  181 NAPHLAIAYT DRRHPTVAVD AVIAATHLDI LAPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.0
Match:	1hfeL
Description:	Fe-only hydrogenase larger subunit, C-domain; Fe-only hydrogenase larger subunit, N-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.858923918006343	bayes_pls_golite062009
oxidoreductase activity	0.100797464100664	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [215-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGVGTCWAGF FQMAAEAWEP LQQAIGLPEG HHAGYTLLLG YPAVTYRRPP RRNRLDVVWR  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	2hayA
Description:	No description for 2hayA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: