YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995566, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995566, gi|....

Description	E-value	Query Range	Subject Range
FABZ_PHOPR - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Photobacterium profundum GN=fabZ PE=3 SV=1 FABZ_PHOPR - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Photobacterium profundum (strain SS9) GN=fa...	178.0	[0..1]	[127..8]
gi\|90413540, gi\|... - gi\|90413540\|ref\|ZP_01221531.1\| (3R)-hydroxymyristoyl ACP dehydratase [Photobacterium profundum 3TCK]...	177.0	[0..1]	[127..8]
FABZ_PSEHT - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudoalteromonas haloplanktis (strain TAC ...	177.0	[0..1]	[127..8]
FABZ_PSEU2 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. syringae (strain B... FABZ_PSE14 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas savastanoi pv. phaseolicola (st... tr\|F3G1L3\|F3G1L3... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. pisi str. 1704B GN... gi\|237800154 - gi\|237800154\|ref\|ZP_04588615.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Pseudomonas syringae pv. oryz...	177.0	[0..1]	[129..2]
gi\|213969129, gi... - gi\|213969129\|ref\|ZP_03397268.1\| beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Pseudomona... FABZ_PSESM - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. tomato (strain DC3... FABZ_PSESM - (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas syringae pv. tomato GN=fabZ ...	177.0	[0..1]	[129..2]
FABZ_VIBFM - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio fischeri (strain MJ11) GN=fabZ PE=3 ... FABZ_VIBF1 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio fischeri (strain ATCC 700601 / ES114...	175.0	[0..1]	[127..8]
gi\|114770497 - gi\|114770497\|ref\|ZP_01447987.1\| (3R)-hydroxymyristol acyl carrier protein dehydratase [alpha proteob... gi\|221133304 - gi\|221133304\|ref\|ZP_03559609.1\| 3-hydroxymyristol acyl carrier protein dehydratase [Glaciecola sp. H... gi\|114548678, gi... - gi\|114770497\|ref\|ZP_01447987.1\| (3R)-hydroxymyristol acyl carrier protein dehydratase [alpha proteob...	175.0	[0..3]	[129..10]
gi\|89075409, gi\|... - gi\|89075409\|ref\|ZP_01161826.1\| (3R)-hydroxymyristoyl ACP dehydratase [Photobacterium sp. SKA34], gi\|...	175.0	[0..1]	[127..8]
gi\|91795797, gi\|... - gi\|92112707\|ref\|YP_572635.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Chromohalobacter salexigens DSM ...	175.0	[0..1]	[129..3]
gi\|84319625, gi\|... - gi\|84319625\|ref\|ZP_00968019.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABZ_PSEAE - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas aeruginosa (strain ATCC 15692 /... gi\|126195721, gi... - gi\|84325651\|ref\|ZP_00973685.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABZ_PSEA7 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas aeruginosa (strain PA7) GN=fabZ... gi\|107103159 - gi\|107103159\|ref\|ZP_01367077.1\| hypothetical protein PaerPA_01004228 [Pseudomonas aeruginosa PACS2] FABZ_PSEAE - (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa GN=fabZ PE=1 SV=1 FABZ_PSEA8 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas aeruginosa (strain LESB58) GN=f... FABZ_PSEAB - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas aeruginosa (strain UCBPP-PA14) ...	174.0	[0..1]	[129..2]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSPAPWDFL PHRYPFLVLD RIIAKEPGRS ATALMRTTAA GTRGWSSLLL LEAMAQLGGI  60
   61 AAADDTNGGG ILAAVDHADF HGTVEAGDTL TVSVTVVKSF GPLHLIAGEV TADGRPAASA 120
  121 TITLKVGNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.30103
Match:	1u1zA
Description:	The Structure of (3R)-hydroxyacyl-ACP dehydratase (FabZ)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.75530090056705	bayes_pls_golite062009
catalytic activity	1.11649534052993	bayes_pls_golite062009
thiolester hydrolase activity	0.65794221902015	bayes_pls_golite062009
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.24094527143225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: