YRC Public Data Repository - Protein Structure Prediction

Protein:	PRMA_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRMA_GEOSL.

Description	E-value	Query Range	Subject Range
PRMA_BACHD - Ribosomal protein L11 methyltransferase OS=Bacillus halodurans GN=prmA PE=3 SV=1 PRMA_BACHD - Ribosomal protein L11 methyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FE...	199.0	[0..3]	[296..1]
gi\|89208405, gi\|... - gi\|89208405\|ref\|ZP_01186914.1\| Ribosomal protein L11 methyltransferase [Bacillus weihenstephanensis ... gi\|228648314, gi... - gi\|229135137\|ref\|ZP_04263938.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-ST196]...	198.0	[0..3]	[296..1]
PRMA_GEOMG - Ribosomal protein L11 methyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DS...	198.0	[0..1]	[296..1]
gi\|89084796, gi\|... - gi\|89100453\|ref\|ZP_01173315.1\| ribosomal protein L11 methyltransferase [Bacillus sp. NRRL B-14911], ...	196.0	[0..3]	[298..1]
gi\|2634991, gi\|1... - gi\|2634991\|emb\|CAB14487.1\| yqeT [Bacillus subtilis subsp. subtilis str. 168], gi\|16079599\|ref\|NP_390... PRMA_BACSU - Ribosomal protein L11 methyltransferase OS=Bacillus subtilis GN=prmA PE=3 SV=1	195.0	[0..3]	[297..1]
PRMA_BACLD - Ribosomal protein L11 methyltransferase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM ...	195.0	[0..3]	[297..1]
gi\|228799093, gi... - gi\|228960580\|ref\|ZP_04122228.1\| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis sero... gi\|229129592, gi... - gi\|229129592\|ref\|ZP_04258561.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-Cer4],... PRMA_BACCR - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / ... gi\|229152514, gi... - gi\|229152514\|ref\|ZP_04280705.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus m1550], gi\|... PRMA_BACC4 - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain B4264) GN=prmA PE=3 SV=1	195.0	[0..3]	[296..1]
PRMA_BACHK - Ribosomal protein L11 methyltransferase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN... PRMA_BACCZ - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=prmA PE=3 SV=1 gi\|47529834, gi\|... - gi\|47529834\|ref\|YP_021183.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. 'Ames ... gi\|49181134, gi\|... - gi\|49187207\|ref\|YP_030459.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Sterne... gi\|21402359, gi\|... - gi\|65321685\|ref\|ZP_00394644.1\| COG2264: Ribosomal protein L11 methylase [Bacillus anthracis str. A20... gi\|30264383, gi\|... - gi\|30264383\|ref\|NP_846760.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Ames],... PRMA_BACAN - Ribosomal protein L11 methyltransferase OS=Bacillus anthracis GN=prmA PE=3 SV=1 gi\|167530047, gi... - gi\|167634595\|ref\|ZP_02392915.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A04... PRMA_BACAH - Ribosomal protein L11 methyltransferase OS=Bacillus thuringiensis (strain Al Hakam) GN=prmA PE=3 SV=... gi\|167638656, gi... - gi\|167638656\|ref\|ZP_02396932.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A01... gi\|170687478, gi... - gi\|170687478\|ref\|ZP_02878695.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A04... gi\|170707375, gi... - gi\|170707375\|ref\|ZP_02897829.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A03... gi\|172081575, gi... - gi\|177653293\|ref\|ZP_02935545.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A01... gi\|190562030, gi... - gi\|190567039\|ref\|ZP_03019955.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis Tsiankov... gi\|196034488, gi... - gi\|196034488\|ref\|ZP_03101897.1\| ribosomal protein L11 methyltransferase [Bacillus cereus W], gi\|1959... gi\|196029939, gi... - gi\|196039312\|ref\|ZP_03106618.1\| ribosomal protein L11 methyltransferase [Bacillus cereus NVH0597-99]... gi\|254757779 - gi\|254757779\|ref\|ZP_05209806.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Aus... gi\|254750893 - gi\|254750893\|ref\|ZP_05202932.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Vol... gi\|254741455 - gi\|254741455\|ref\|ZP_05199142.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Kru... gi\|254736417 - gi\|254736417\|ref\|ZP_05194123.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Wes... gi\|254721903 - gi\|254721903\|ref\|ZP_05183692.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A10... gi\|254684069 - gi\|254684069\|ref\|ZP_05147929.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. CNE... PRMA_BACAA - Ribosomal protein L11 methyltransferase OS=Bacillus anthracis (strain A0248) GN=prmA PE=3 SV=1 gi\|165872039, gi... - gi\|165872039\|ref\|ZP_02216679.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A04... gi\|229186552, gi... - gi\|229186552\|ref\|ZP_04313713.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus BGSC 6E1], ... gi\|228659565, gi... - gi\|229123851\|ref\|ZP_04253044.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus 95/8201], g... gi\|229093382, gi... - gi\|229093382\|ref\|ZP_04224487.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock3-42], ... gi\|228811611, gi... - gi\|228948025\|ref\|ZP_04110310.1\| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis sero... gi\|228823992, gi... - gi\|228935632\|ref\|ZP_04098446.1\| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis sero... gi\|228830307, gi... - gi\|228929356\|ref\|ZP_04092380.1\| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis sero... gi\|228916944, gi... - gi\|228916944\|ref\|ZP_04080505.1\| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis sero... PRMA_BACAC - Ribosomal protein L11 methyltransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=prmA P... PRMA_BACC3 - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain 03BB102) GN=prmA PE=3 SV=1 PRMA_BACC0 - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain AH820) GN=prmA PE=3 SV=1 PRMA_BACHK - Ribosomal protein L11 methyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=prmA PE=3 SV=1	195.0	[0..3]	[296..1]
PRMA_CLOAB - Ribosomal protein L11 methyltransferase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / J... PRMA_CLOAB - Ribosomal protein L11 methyltransferase OS=Clostridium acetobutylicum GN=prmA PE=2 SV=3	194.0	[0..1]	[296..1]
gi\|47555554, gi\|... - gi\|47567877\|ref\|ZP_00238585.1\| ribosomal protein L11 methyltransferase [Bacillus cereus G9241], gi\|4...	194.0	[0..3]	[296..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKQWAEVCC QVPAGLVDLL ADFLVELSGN GVSIDNRALD TFTLDGIEEL DTATVRAYFD  60
   61 PAT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [64-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMAGQIAQIE RFLGDNAAAF GGAPIPAPTV TLIRDEDWAT GWRQHFVPTR IGRHLVIKPT  60
   61 WEPFAPEPGD QVIELDPGMA FGTGTHPTTR LCLEALETLG RPDRVLDVGT GSGILAIAAV 120
  121 RLGARQVIGT DIDPDAVIVA GENCALNGVE VELVTTPLAL IPGRFDVVLA NILAEDLVRM 180
  181 AGDLAAKVAA GGHLILSGIL TEREAFVVEG FGRSGLALVA VSREGEWSCL VYRNEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	1ufkA
Description:	Crystal structure of TT0836
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
rRNA methyltransferase activity	2.44443043670156	bayes_pls_golite062009
transferase activity	2.42370637689376	bayes_pls_golite062009
methyltransferase activity	2.24556320310886	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	2.1789895493932	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.06810685308813	bayes_pls_golite062009
catalytic activity	1.62377578202456	bayes_pls_golite062009
RNA methyltransferase activity	1.36067005317038	bayes_pls_golite062009
N-methyltransferase activity	0.49575399394607	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	0.42556595268413	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	0.32546946538886	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: