YRC Public Data Repository - Protein Structure Prediction

Protein:	PRMA_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRMA_GEOSL.

Description	E-value	Query Range	Subject Range
PRMA_BACHD - Ribosomal protein L11 methyltransferase OS=Bacillus halodurans GN=prmA PE=3 SV=1 PRMA_BACHD - Ribosomal protein L11 methyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FE...	199.0	[0..3]	[296..1]
gi\|89208405, gi\|... - gi\|89208405\|ref\|ZP_01186914.1\| Ribosomal protein L11 methyltransferase [Bacillus weihenstephanensis ... gi\|228648314, gi... - gi\|229135137\|ref\|ZP_04263938.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-ST196]...	198.0	[0..3]	[296..1]
PRMA_GEOMG - Ribosomal protein L11 methyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DS...	198.0	[0..1]	[296..1]
gi\|89084796, gi\|... - gi\|89100453\|ref\|ZP_01173315.1\| ribosomal protein L11 methyltransferase [Bacillus sp. NRRL B-14911], ...	196.0	[0..3]	[298..1]
gi\|2634991, gi\|1... - gi\|2634991\|emb\|CAB14487.1\| yqeT [Bacillus subtilis subsp. subtilis str. 168], gi\|16079599\|ref\|NP_390... PRMA_BACSU - Ribosomal protein L11 methyltransferase OS=Bacillus subtilis GN=prmA PE=3 SV=1	195.0	[0..3]	[297..1]
PRMA_BACLD - Ribosomal protein L11 methyltransferase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM ...	195.0	[0..3]	[297..1]
gi\|228799093, gi... - gi\|228960580\|ref\|ZP_04122228.1\| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis sero... gi\|229129592, gi... - gi\|229129592\|ref\|ZP_04258561.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-Cer4],... PRMA_BACCR - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / ... gi\|229152514, gi... - gi\|229152514\|ref\|ZP_04280705.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus m1550], gi\|... PRMA_BACC4 - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain B4264) GN=prmA PE=3 SV=1	195.0	[0..3]	[296..1]
PRMA_BACHK - Ribosomal protein L11 methyltransferase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN... PRMA_BACCZ - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=prmA PE=3 SV=1 gi\|47529834, gi\|... - gi\|47529834\|ref\|YP_021183.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. 'Ames ... gi\|49181134, gi\|... - gi\|49187207\|ref\|YP_030459.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Sterne... gi\|21402359, gi\|... - gi\|65321685\|ref\|ZP_00394644.1\| COG2264: Ribosomal protein L11 methylase [Bacillus anthracis str. A20... gi\|30264383, gi\|... - gi\|30264383\|ref\|NP_846760.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Ames],... PRMA_BACAN - Ribosomal protein L11 methyltransferase OS=Bacillus anthracis GN=prmA PE=3 SV=1 gi\|167530047, gi... - gi\|167634595\|ref\|ZP_02392915.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A04... PRMA_BACAH - Ribosomal protein L11 methyltransferase OS=Bacillus thuringiensis (strain Al Hakam) GN=prmA PE=3 SV=... gi\|167638656, gi... - gi\|167638656\|ref\|ZP_02396932.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A01... gi\|170687478, gi... - gi\|170687478\|ref\|ZP_02878695.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A04... gi\|170707375, gi... - gi\|170707375\|ref\|ZP_02897829.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A03... gi\|172081575, gi... - gi\|177653293\|ref\|ZP_02935545.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A01... gi\|190562030, gi... - gi\|190567039\|ref\|ZP_03019955.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis Tsiankov... gi\|196034488, gi... - gi\|196034488\|ref\|ZP_03101897.1\| ribosomal protein L11 methyltransferase [Bacillus cereus W], gi\|1959... gi\|196029939, gi... - gi\|196039312\|ref\|ZP_03106618.1\| ribosomal protein L11 methyltransferase [Bacillus cereus NVH0597-99]... gi\|254757779 - gi\|254757779\|ref\|ZP_05209806.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Aus... gi\|254750893 - gi\|254750893\|ref\|ZP_05202932.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Vol... gi\|254741455 - gi\|254741455\|ref\|ZP_05199142.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Kru... gi\|254736417 - gi\|254736417\|ref\|ZP_05194123.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. Wes... gi\|254721903 - gi\|254721903\|ref\|ZP_05183692.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A10... gi\|254684069 - gi\|254684069\|ref\|ZP_05147929.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. CNE... PRMA_BACAA - Ribosomal protein L11 methyltransferase OS=Bacillus anthracis (strain A0248) GN=prmA PE=3 SV=1 gi\|165872039, gi... - gi\|165872039\|ref\|ZP_02216679.1\| ribosomal protein L11 methyltransferase [Bacillus anthracis str. A04... gi\|229186552, gi... - gi\|229186552\|ref\|ZP_04313713.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus BGSC 6E1], ... gi\|228659565, gi... - gi\|229123851\|ref\|ZP_04253044.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus 95/8201], g... gi\|229093382, gi... - gi\|229093382\|ref\|ZP_04224487.1\| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock3-42], ... gi\|228811611, gi... - gi\|228948025\|ref\|ZP_04110310.1\| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis sero... gi\|228823992, gi... - gi\|228935632\|ref\|ZP_04098446.1\| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis sero... gi\|228830307, gi... - gi\|228929356\|ref\|ZP_04092380.1\| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis sero... gi\|228916944, gi... - gi\|228916944\|ref\|ZP_04080505.1\| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis sero... PRMA_BACAC - Ribosomal protein L11 methyltransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=prmA P... PRMA_BACC3 - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain 03BB102) GN=prmA PE=3 SV=1 PRMA_BACC0 - Ribosomal protein L11 methyltransferase OS=Bacillus cereus (strain AH820) GN=prmA PE=3 SV=1 PRMA_BACHK - Ribosomal protein L11 methyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=prmA PE=3 SV=1	195.0	[0..3]	[296..1]
PRMA_CLOAB - Ribosomal protein L11 methyltransferase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / J... PRMA_CLOAB - Ribosomal protein L11 methyltransferase OS=Clostridium acetobutylicum GN=prmA PE=2 SV=3	194.0	[0..1]	[296..1]
gi\|47555554, gi\|... - gi\|47567877\|ref\|ZP_00238585.1\| ribosomal protein L11 methyltransferase [Bacillus cereus G9241], gi\|4...	194.0	[0..3]	[296..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKQWAEVCC QVPAGLVDLL ADFLVELSGN GVSIDNRALD TFTLDGIEEL DTATVRAYFD  60
   61 PAT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [64-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMAGQIAQIE RFLGDNAAAF GGAPIPAPTV TLIRDEDWAT GWRQHFVPTR IGRHLVIKPT  60
   61 WEPFAPEPGD QVIELDPGMA FGTGTHPTTR LCLEALETLG RPDRVLDVGT GSGILAIAAV 120
  121 RLGARQVIGT DIDPDAVIVA GENCALNGVE VELVTTPLAL IPGRFDVVLA NILAEDLVRM 180
  181 AGDLAAKVAA GGHLILSGIL TEREAFVVEG FGRSGLALVA VSREGEWSCL VYRNEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	1ufkA
Description:	Crystal structure of TT0836
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
rRNA methyltransferase activity	2.44443043670156	bayes_pls_golite062009
transferase activity	2.42370637689376	bayes_pls_golite062009
methyltransferase activity	2.24556320310886	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	2.1789895493932	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.06810685308813	bayes_pls_golite062009
catalytic activity	1.62377578202456	bayes_pls_golite062009
RNA methyltransferase activity	1.36067005317038	bayes_pls_golite062009
N-methyltransferase activity	0.49575399394607	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	0.42556595268413	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	0.32546946538886	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: