YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995178, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995178, gi|....

Description	E-value	Query Range	Subject Range
gi\|82404653, gi\|... - gi\|82497288\|ref\|ZP_00882844.1\| Carbonate dehydratase [Shewanella sp. MR-4], gi\|82404653\|gb\|EAP45337....	245.0	[0..1]	[199..3]
gi\|113889061, gi... - gi\|78690890\|ref\|ZP_00855526.1\| Carbonate dehydratase [Shewanella sp. MR-7], gi\|78509731\|gb\|EAP23117....	245.0	[0..1]	[199..3]
gi\|124547212, gi... - gi\|124547212\|ref\|ZP_01706159.1\| carbonic anhydrase [Shewanella putrefaciens 200], gi\|124509364\|gb\|EA... gi\|120558793, gi... - gi\|82743458\|ref\|ZP_00906103.1\| Carbonate dehydratase [Shewanella sp. W3-18-1], gi\|82719181\|gb\|EAP541... gi\|77815085, gi\|... - gi\|77815085\|ref\|ZP_00814328.1\| Carbonate dehydratase [Shewanella putrefaciens CN-32], gi\|77809949\|gb...	244.0	[0..1]	[199..3]
gi\|126174585, gi... - gi\|68544769\|ref\|ZP_00584374.1\| Carbonate dehydratase [Shewanella baltica OS155], gi\|68517523\|gb\|EAN4... gi\|160875587, gi... - gi\|160875587\|ref\|YP_001554903.1\| carbonate dehydratase [Shewanella baltica OS195], gi\|160861109\|gb\|A...	243.0	[0..1]	[200..3]
gi\|91793167, gi\|... - gi\|91793167\|ref\|YP_562818.1\| carbonate dehydratase [Shewanella denitrificans OS217], gi\|91715169\|gb\|...	242.0	[0..1]	[200..3]
gi\|78505544, gi\|... - gi\|78686660\|ref\|ZP_00851424.1\| Carbonate dehydratase [Shewanella sp. ANA-3], gi\|78505544\|gb\|EAP19073...	241.0	[0..1]	[199..3]
gi\|54310267, gi\|... - gi\|54310267\|ref\|YP_131287.1\| putative carbonic anhydrase [Photobacterium profundum SS9], gi\|46914708...	241.0	[0..2]	[215..4]
SO2474 - carbonic anhydrase family protein gi\|24348485, gi\|... - gi\|24374018\|ref\|NP_718061.1\| carbonic anhydrase family protein [Shewanella oneidensis MR-1], gi\|2434...	240.0	[0..1]	[199..3]
gi\|90412014, gi\|... - gi\|90412014\|ref\|ZP_01220021.1\| putative carbonic anhydrase [Photobacterium profundum 3TCK], gi\|90326...	240.0	[0..2]	[215..4]
gi\|85093349 - gi\|85093349\|ref\|XP_959676.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32416722, gi\|... - gi\|32416722\|ref\|XP_328839.1\| hypothetical protein [Neurospora crassa], gi\|28921124\|gb\|EAA30440.1\| hy...	239.0	[0..3]	[204..77]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRLLEGNR RFVAEVFEKE RETFATLARG QRPTVLWIGC SDSRVPVNTI TQTKAGEVFV  60
   61 HRNVGNVVSV NDWNLSAVLE FSINHLCIPD IVICGHYGCG GIQALDEERA DDKYIPIWLI 120
  121 NAYKAKERVD EKIRALHIGL PPEQRMKLIV EENVRLQLEH LREYPFVRTA MRQGKLSIHG 180
  181 WIYDMESGEI KILSTERPGE GAAVSSRATE YCPLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.0
Match:	1i6oA
Description:	beta-carbonic anhydrase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbonate dehydratase activity	2.96380803089124	bayes_pls_golite062009
catalytic activity	1.85658156053797	bayes_pls_golite062009
carbon-oxygen lyase activity	1.691366175135	bayes_pls_golite062009
hydro-lyase activity	1.65497918079842	bayes_pls_golite062009
lyase activity	1.62374861994341	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: