YRC Public Data Repository - Protein Structure Prediction

Protein:	MFDX2_ARATH
Organism:	Arabidopsis thaliana
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MFDX2_ARATH.

Description	E-value	Query Range	Subject Range
MFDX1_ARATH - Adrenodoxin-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=MFDX1 PE=1 SV=1	166.0	[0..1]	[197..1]
gi\|218198975 - gi\|218198975\|gb\|EEC81402.1\| hypothetical protein OsI_24632 [Oryza sativa Indica Group] gi\|222636316, gi... - gi\|50933753\|ref\|XP_476404.1\| putative ferredoxin [Oryza sativa (japonica cultivar-group)], gi\|331464...	142.0	[0..5]	[197..4]
gi\|63258706, gi\|... - gi\|66047999\|ref\|YP_237840.1\| ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding...	136.0	[0..3]	[175..199]
gi\|92867560 - gi\|92867560\|gb\|ABE77794.1\| Adrenodoxin [Medicago truncatula]	135.0	[0..70]	[197..77]
gi\|86162788, gi\|... - gi\|87121990\|ref\|ZP_01077875.1\| oxidoreductase FAD-binding domain/oxidoreductase NAD-bindingdomain/2F...	134.0	[0..3]	[175..202]
gi\|71558446, gi\|... - gi\|71737893\|ref\|YP_276904.1\| oxidoreductase [Pseudomonas syringae pv. phaseolicola 1448A], gi\|715584...	134.0	[0..3]	[175..199]
gi\|104784081, gi... - gi\|95113068\|emb\|CAK17796.1\| putative oxidoreductase, FAD-binding [Pseudomonas entomophila L48], gi\|1... gi\|95113068 - gi\|95113068\|emb\|CAK17796.1\| putative oxidoreductase, FAD-binding [Pseudomonas entomophila L48]	132.0	[0..3]	[175..199]
gi\|37653251 - gi\|37653251\|emb\|CAD79348.1\| ferredoxin precursor [Digitalis lanata]	132.0	[0..59]	[197..43]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFHRLSRLG SRIVKELPRE RHLSMCGKRI LQRSYGQYLQ SSPMLQRQTR SFKEALFSNN  60
   61 HKFCTSFSTT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [71-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEKGGEKTEK INVTFVDKDG EEIHIKVPVG MNILEAAHEN DIELEGACEG SLACSTCHVI  60
   61 VMDTKYYNKL EEPTDEENDM LDLAFGLTAT SRLGCQVIAK PELDGVRLAI PSATRNFAVD 120
  121 GFVPKPH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.09691
Match:	1i7hA
Description:	Adrenodoxin-like ferredoxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits