YRC Public Data Repository - Protein Structure Prediction

Protein:	MFDX2_ARATH
Organism:	Arabidopsis thaliana
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MFDX2_ARATH.

Description	E-value	Query Range	Subject Range
MFDX1_ARATH - Adrenodoxin-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=MFDX1 PE=1 SV=1	166.0	[0..1]	[197..1]
gi\|218198975 - gi\|218198975\|gb\|EEC81402.1\| hypothetical protein OsI_24632 [Oryza sativa Indica Group] gi\|222636316, gi... - gi\|50933753\|ref\|XP_476404.1\| putative ferredoxin [Oryza sativa (japonica cultivar-group)], gi\|331464...	142.0	[0..5]	[197..4]
gi\|63258706, gi\|... - gi\|66047999\|ref\|YP_237840.1\| ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding...	136.0	[0..3]	[175..199]
gi\|92867560 - gi\|92867560\|gb\|ABE77794.1\| Adrenodoxin [Medicago truncatula]	135.0	[0..70]	[197..77]
gi\|86162788, gi\|... - gi\|87121990\|ref\|ZP_01077875.1\| oxidoreductase FAD-binding domain/oxidoreductase NAD-bindingdomain/2F...	134.0	[0..3]	[175..202]
gi\|71558446, gi\|... - gi\|71737893\|ref\|YP_276904.1\| oxidoreductase [Pseudomonas syringae pv. phaseolicola 1448A], gi\|715584...	134.0	[0..3]	[175..199]
gi\|104784081, gi... - gi\|95113068\|emb\|CAK17796.1\| putative oxidoreductase, FAD-binding [Pseudomonas entomophila L48], gi\|1... gi\|95113068 - gi\|95113068\|emb\|CAK17796.1\| putative oxidoreductase, FAD-binding [Pseudomonas entomophila L48]	132.0	[0..3]	[175..199]
gi\|37653251 - gi\|37653251\|emb\|CAD79348.1\| ferredoxin precursor [Digitalis lanata]	132.0	[0..59]	[197..43]

Back

Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFHRLSRLG SRIVKELPRE RHLSMCGKRI LQRSYGQYLQ SSPMLQRQTR SFKEALFSNN  60
   61 HKFCTSFSTT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.762	N/A	N/A	a.23.7	Description not found.
View	Download	0.751	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.652	N/A	N/A	a.7.16	Description not found.
View	Download	0.611	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.593	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

Predicted Domain #2

Region A:
Residues: [71-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEKGGEKTEK INVTFVDKDG EEIHIKVPVG MNILEAAHEN DIELEGACEG SLACSTCHVI  60
   61 VMDTKYYNKL EEPTDEENDM LDLAFGLTAT SRLGCQVIAK PELDGVRLAI PSATRNFAVD 120
  121 GFVPKPH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.09691
Match:	1i7hA
Description:	Adrenodoxin-like ferredoxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits