YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24053882, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24053882, gi|....

Description	E-value	Query Range	Subject Range
EG11750 - transposase_31 family protein / Transposase_31 family protein, function unknown gi\|89110599, gi\|... - gi\|89110599\|ref\|AP_004379.1\| predicted transposase [Escherichia coli str. K-12 substr. W3110], gi\|85... gi\|253771760, gi... - gi\|253771760\|ref\|YP_003034591.1\| putative transposase YhgA family protein [Escherichia coli BL21(DE3... gi\|238863252, gi... - gi\|238902502\|ref\|YP_002928298.1\| putative transposase [Escherichia coli BW2952], gi\|238863252\|gb\|ACR... EG11750 - transposase_31 family protein / Transposase_31 family protein, function unknown YHGA_ECOLI - Hypothetical protein yhgA - Escherichia coli	298.0	[0..1]	[292..1]
gi\|110616791, gi... - gi\|110807243\|ref\|YP_690763.1\| hypothetical protein SFV_3416 [Shigella flexneri 5 str. 8401], gi\|1106...	296.0	[0..1]	[295..1]
gi\|83571668, gi\|... - gi\|83571668\|ref\|ZP_00923108.1\| hypothetical protein Sdys1_01000384 [Shigella dysenteriae 1012], gi\|1...	296.0	[0..1]	[292..1]
gi\|187429985, gi... - gi\|75179970\|ref\|ZP_00699957.1\| hypothetical protein SboyB_01000298 [Shigella boydii BS512], gi\|18773...	295.0	[0..1]	[292..1]
gi\|81247179, gi\|... - gi\|82545768\|ref\|YP_409715.1\| hypothetical protein SBO_3400 [Shigella boydii Sb227], gi\|81247179\|gb\|A...	294.0	[0..1]	[292..1]
gi\|193061708, gi... - gi\|75260300\|ref\|ZP_00731568.1\| hypothetical protein EcolE2_01000188 [Escherichia coli E22], gi\|19306... gi\|75211777, gi\|... - gi\|75211777\|ref\|ZP_00711841.1\| hypothetical protein EcolB_01001133 [Escherichia coli B171], gi\|19442... gi\|157157136, gi... - gi\|75188185\|ref\|ZP_00701452.1\| hypothetical protein EcolE_01001429 [Escherichia coli E24377A], gi\|15...	294.0	[0..1]	[292..1]
gi\|82778772, gi\|... - gi\|82778772\|ref\|YP_405121.1\| hypothetical protein SDY_3665 [Shigella dysenteriae Sd197], gi\|81242920...	294.0	[0..1]	[292..1]
gi\|188493692, gi... - gi\|75516121\|ref\|ZP_00738239.1\| hypothetical protein Ecol5_01000181 [Escherichia coli 53638], gi\|1884... gi\|157162888, gi... - gi\|75197342\|ref\|ZP_00707412.1\| hypothetical protein EcolH_01003158 [Escherichia coli HS], gi\|1571628... gi\|254163339, gi... - gi\|254163339\|ref\|YP_003046447.1\| predicted transposase [Escherichia coli B str. REL606], gi\|25397524... gi\|83588724, gi\|... - gi\|83588724\|ref\|ZP_00927348.1\| hypothetical protein Ecol1_01000357 [Escherichia coli 101-1], gi\|1944... gi\|251786661, gi... - gi\|251786661\|ref\|YP_003000965.1\| hypothetical protein B21_03215 [Escherichia coli BL21], gi\|24237893... gi\|124528184, gi... - gi\|124528184\|ref\|ZP_01699517.1\| putative transposase, YhgA family protein [Escherichia coli B], gi\|1... gi\|253979396, gi... - gi\|254290089\|ref\|YP_003055837.1\| predicted transposase [Escherichia coli BL21(DE3)], gi\|253979396\|gb... gi\|169753281, gi... - gi\|170018353\|ref\|YP_001723307.1\| hypothetical protein EcolC_0302 [Escherichia coli ATCC 8739], gi\|16...	293.0	[0..1]	[292..1]
gi\|209756458, gi... - pir\|\|E91160 hypothetical protein ECs4253 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|189374268, gi... - gi\|189374268\|gb\|EDU92684.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|15833507, gi\|... - gi\|15833507\|ref\|NP_312280.1\| hypothetical protein ECs4253 [Escherichia coli O157:H7], gi\|13363727\|db... gi\|189369918, gi... - gi\|189369918\|gb\|EDU88334.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|217321877, gi... - gi\|217325656\|ref\|ZP_03441740.1\| putative transposase, YhgA [Escherichia coli O157:H7 str. TW14588], ... gi\|15833507, gi\|... - gi\|15833507\|ref\|NP_312280.1\| hypothetical protein ECs4253 [Escherichia coli O157:H7 str. Sakai], gi\|...	293.0	[0..1]	[292..1]
gi\|15803915, gi\|... - gi\|15803915\|ref\|NP_289951.1\| hypothetical protein Z4766 [Escherichia coli O157:H7 EDL933], gi\|125180... gi\|25345787 - pir\|\|D86006 hypothetical protein yhgA [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	293.0	[0..1]	[289..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKQSSTPH DALFKLFLRQ PETARDFLAF HLPAPIHALC DMKTLKLESR SFIDDDLRES  60
   61 YSDVLWSVKT EQGPGYIYCL IEHQSTSNKL IAFRMMRYAI AAMQNHLDAG YKTLPMVVPL 120
  121 LFYHGIESPY PYSLCWLDCF ADPKLARQLY ASAFPLIDVT VMPDDEIMQH RRMALLELIQ 180
  181 KHIRQR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [187-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLMGLVEQMA CLLSSGYAND RQIKGLFNYI LQTGDAVRFN DFIDGVAERS PKHKESLMTI  60
   61 AERLRQEGEQ SKALHIAKIM LESGVPLADI MRFTGLSEEE LAAASRLAP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.915	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.908	N/A	N/A	a.118.1	ARM repeat
View	Download	0.908	N/A	N/A	a.118.1	ARM repeat
View	Download	0.854	N/A	N/A	a.118.8	TPR-like
View	Download	0.840	N/A	N/A	a.118.11	Cytochrome c oxidase subunit E

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits