YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24053882, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24053882, gi|....

Description	E-value	Query Range	Subject Range
EG11750 - transposase_31 family protein / Transposase_31 family protein, function unknown gi\|89110599, gi\|... - gi\|89110599\|ref\|AP_004379.1\| predicted transposase [Escherichia coli str. K-12 substr. W3110], gi\|85... gi\|253771760, gi... - gi\|253771760\|ref\|YP_003034591.1\| putative transposase YhgA family protein [Escherichia coli BL21(DE3... gi\|238863252, gi... - gi\|238902502\|ref\|YP_002928298.1\| putative transposase [Escherichia coli BW2952], gi\|238863252\|gb\|ACR... EG11750 - transposase_31 family protein / Transposase_31 family protein, function unknown YHGA_ECOLI - Hypothetical protein yhgA - Escherichia coli	298.0	[0..1]	[292..1]
gi\|110616791, gi... - gi\|110807243\|ref\|YP_690763.1\| hypothetical protein SFV_3416 [Shigella flexneri 5 str. 8401], gi\|1106...	296.0	[0..1]	[295..1]
gi\|83571668, gi\|... - gi\|83571668\|ref\|ZP_00923108.1\| hypothetical protein Sdys1_01000384 [Shigella dysenteriae 1012], gi\|1...	296.0	[0..1]	[292..1]
gi\|187429985, gi... - gi\|75179970\|ref\|ZP_00699957.1\| hypothetical protein SboyB_01000298 [Shigella boydii BS512], gi\|18773...	295.0	[0..1]	[292..1]
gi\|81247179, gi\|... - gi\|82545768\|ref\|YP_409715.1\| hypothetical protein SBO_3400 [Shigella boydii Sb227], gi\|81247179\|gb\|A...	294.0	[0..1]	[292..1]
gi\|193061708, gi... - gi\|75260300\|ref\|ZP_00731568.1\| hypothetical protein EcolE2_01000188 [Escherichia coli E22], gi\|19306... gi\|75211777, gi\|... - gi\|75211777\|ref\|ZP_00711841.1\| hypothetical protein EcolB_01001133 [Escherichia coli B171], gi\|19442... gi\|157157136, gi... - gi\|75188185\|ref\|ZP_00701452.1\| hypothetical protein EcolE_01001429 [Escherichia coli E24377A], gi\|15...	294.0	[0..1]	[292..1]
gi\|82778772, gi\|... - gi\|82778772\|ref\|YP_405121.1\| hypothetical protein SDY_3665 [Shigella dysenteriae Sd197], gi\|81242920...	294.0	[0..1]	[292..1]
gi\|188493692, gi... - gi\|75516121\|ref\|ZP_00738239.1\| hypothetical protein Ecol5_01000181 [Escherichia coli 53638], gi\|1884... gi\|157162888, gi... - gi\|75197342\|ref\|ZP_00707412.1\| hypothetical protein EcolH_01003158 [Escherichia coli HS], gi\|1571628... gi\|254163339, gi... - gi\|254163339\|ref\|YP_003046447.1\| predicted transposase [Escherichia coli B str. REL606], gi\|25397524... gi\|83588724, gi\|... - gi\|83588724\|ref\|ZP_00927348.1\| hypothetical protein Ecol1_01000357 [Escherichia coli 101-1], gi\|1944... gi\|251786661, gi... - gi\|251786661\|ref\|YP_003000965.1\| hypothetical protein B21_03215 [Escherichia coli BL21], gi\|24237893... gi\|124528184, gi... - gi\|124528184\|ref\|ZP_01699517.1\| putative transposase, YhgA family protein [Escherichia coli B], gi\|1... gi\|253979396, gi... - gi\|254290089\|ref\|YP_003055837.1\| predicted transposase [Escherichia coli BL21(DE3)], gi\|253979396\|gb... gi\|169753281, gi... - gi\|170018353\|ref\|YP_001723307.1\| hypothetical protein EcolC_0302 [Escherichia coli ATCC 8739], gi\|16...	293.0	[0..1]	[292..1]
gi\|209756458, gi... - pir\|\|E91160 hypothetical protein ECs4253 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|189374268, gi... - gi\|189374268\|gb\|EDU92684.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|15833507, gi\|... - gi\|15833507\|ref\|NP_312280.1\| hypothetical protein ECs4253 [Escherichia coli O157:H7], gi\|13363727\|db... gi\|189369918, gi... - gi\|189369918\|gb\|EDU88334.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|217321877, gi... - gi\|217325656\|ref\|ZP_03441740.1\| putative transposase, YhgA [Escherichia coli O157:H7 str. TW14588], ... gi\|15833507, gi\|... - gi\|15833507\|ref\|NP_312280.1\| hypothetical protein ECs4253 [Escherichia coli O157:H7 str. Sakai], gi\|...	293.0	[0..1]	[292..1]
gi\|15803915, gi\|... - gi\|15803915\|ref\|NP_289951.1\| hypothetical protein Z4766 [Escherichia coli O157:H7 EDL933], gi\|125180... gi\|25345787 - pir\|\|D86006 hypothetical protein yhgA [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	293.0	[0..1]	[289..1]

Back

Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKQSSTPH DALFKLFLRQ PETARDFLAF HLPAPIHALC DMKTLKLESR SFIDDDLRES  60
   61 YSDVLWSVKT EQGPGYIYCL IEHQSTSNKL IAFRMMRYAI AAMQNHLDAG YKTLPMVVPL 120
  121 LFYHGIESPY PYSLCWLDCF ADPKLARQLY ASAFPLIDVT VMPDDEIMQH RRMALLELIQ 180
  181 KHIRQR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [187-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLMGLVEQMA CLLSSGYAND RQIKGLFNYI LQTGDAVRFN DFIDGVAERS PKHKESLMTI  60
   61 AERLRQEGEQ SKALHIAKIM LESGVPLADI MRFTGLSEEE LAAASRLAP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.915	N/A	N/A	a.118.9	ENTH/VHS domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits