YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24053883, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24053883, gi|....

Description	E-value	Query Range	Subject Range
YI2A_ECOLX - Insertion element IS2A uncharacterized 48.2 kDa protein OS=Escherichia coli PE=3 SV=2 YI2A_ECOLI - Insertion element IS2A uncharacterized 48.2 kDa protein - Escherichia coli (strain K12)	132.0	[0..1]	[131..1]
gi\|537113\|gb\|AAA... - IS2 ORF; alternate gene name yi21 [Escherichia coli], ORF_o136; orf1 of V00279, ORF_o136 [Escherichi... gi\|13310709\|gb\|A... - IS2, orf1 [Shigella flexneri], IS2 orf1 [Shigella flexneri] gi\|187736768 - gi\|187736768\|ref\|YP_001816506.1\| insertion sequence 2 OrfA protein [Escherichia coli 1520] gi\|170518789, gi... - gi\|170683416\|ref\|YP_001743724.1\| IS2 transposase orfA [Escherichia coli SMS-3-5], gi\|170682700\|ref\|Y... gi\|170081628, gi... - gi\|170083710\|ref\|YP_001733030.1\| KpLE2 phage-like element; IS2 insertion element repressor InsA [Esc... gi\|218370121, gi... - gi\|218701475\|ref\|YP_002409104.1\| insertion sequence 2 OrfA protein [Escherichia coli IAI39], gi\|2187... gi\|218349961, gi... - gi\|218692798\|ref\|YP_002405910.1\| insertion sequence 2 OrfA protein [Escherichia coli UMN026], gi\|218... gi\|190905374, gi... - gi\|191174351\|ref\|ZP_03035857.1\| IS2 transposase orfA [Escherichia coli F11], gi\|190905374\|gb\|EDV6500... gi\|13449045, gi\|... - gi\|13449161\|ref\|NP_085377.1\| IS2 orf1 [Shigella flexneri], gi\|13449045\|ref\|NP_085261.1\| IS2, orf1 [S... gi\|85674501, gi\|... - gi\|89110987\|ref\|AP_004767.1\| IS2 insertion element repressor InsA [Escherichia coli str. K-12 substr... gi\|172051350, gi... - gi\|887812\|gb\|AAA83043.1\| ORF_f136, gi\|882574\|gb\|AAA69212.1\| ORF_o136; orf1 of V00279, gi\|84060890\|re... gi\|9507734, gi\|8... - gi\|9507734\|ref\|NP_061400.1\| hypothetical protein Fpla023 [Plasmid F], gi\|8918844\|dbj\|BAA97891.1\| ybi... gi\|91206289, gi\|... - gi\|91206289\|ref\|YP_538643.1\| IS2 OrfA [Escherichia coli UTI89], gi\|91075740\|gb\|ABE10620.1\| IS2 OrfA ... gi\|31983638, gi\|... - gi\|31983638\|ref\|NP_858341.1\| insertion sequence 2 OrfA protein [Shigella flexneri 2a str. 301], gi\|1... gi\|24115093, gi\|... - gi\|31983638\|ref\|NP_858341.1\| insertion sequence 2 OrfA protein [Shigella flexneri 2a str. 301], gi\|2... gi\|227834494, gi... - gi\|227888533\|ref\|ZP_04006338.1\| IS2 transposase Orf [Escherichia coli 83972], gi\|227834494\|gb\|EEJ449... gi\|30061816, gi\|... - gi\|30065410\|ref\|NP_839581.1\| insertion sequence 2 OrfA protein [Shigella flexneri 2a str. 2457T], gi... gi\|1786557, gi\|1... - gi\|90111531\|ref\|NP_417516.2\| IS2 insertion element repressor InsA [Escherichia coli K12], gi\|9011150...	131.0	[0..1]	[136..1]
gi\|30042211, gi\|... - gi\|30063955\|ref\|NP_838126.1\| insertion sequence 2 OrfA protein [Shigella flexneri 2a str. 2457T], gi...	130.0	[0..1]	[136..1]
gi\|24051997, gi\|... - gi\|24113031\|ref\|NP_707541.1\| insertion sequence 2 OrfA protein [Shigella flexneri 2a str. 301], gi\|2... gi\|30041535, gi\|... - gi\|30063283\|ref\|NP_837454.1\| insertion sequence 2 OrfA protein [Shigella flexneri 2a str. 2457T], gi... gi\|110615162, gi... - gi\|110805614\|ref\|YP_689134.1\| insertion sequence 2 OrfA protein [Shigella flexneri 5 str. 8401], gi\|...	129.0	[0..1]	[136..1]
gi\|38639691, gi\|... - gi\|38639691\|ref\|NP_943460.1\| hypothetical protein LV176 [Klebsiella pneumoniae], gi\|38016789\|gb\|AAR0... gi\|238549664 - gi\|238549664\|dbj\|BAH66015.1\| hypothetical protein [Klebsiella pneumoniae NTUH-K2044]	129.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLILVFRL VIGVQMIDVL GPEKRRRRTT QEKIAIVQQS FEPGMTVSLV ARQHGVAASQ  60
   61 LFLWRKQYQE GSLTAVAAGE QVVPASELAA AMKQIKELQR LLGKKTMENE LLKEAVEYGR 120
  121 AKKWIAHAPL LPGDGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.221849
Match:	2jn6A
Description:	No description for 2jn6A was found.

Predicted functions:

Term	Confidence	Notes
binding	0.334577365229545	bayes_pls_golite062009
transcription regulator activity	0.0696342306231097	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: