YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30041945, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30041945, gi|....

Description	E-value	Query Range	Subject Range
gi\|81241815, gi\|... - gi\|82777667\|ref\|YP_404016.1\| putative transport/receptor protein [Shigella dysenteriae Sd197], gi\|81...	262.0	[0..1]	[222..1]
gi\|81246151, gi\|... - gi\|82544740\|ref\|YP_408687.1\| putative transport/receptor protein [Shigella boydii Sb227], gi\|8124615...	261.0	[0..1]	[222..1]
gi\|209765322, gi... - gi\|25338016\|pir\|\|B85866 probable transport/receptor protein ECs3146 [imported] - Escherichia coli (s... gi\|13362616 - gi\|13362616\|dbj\|BAB36569.1\| putative transport/receptor protein [Escherichia coli O157:H7 str. Sakai... gi\|12516605, gi\|... - gi\|15802808\|ref\|NP_288835.1\| hypothetical protein Z3517 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|13362616 - gi\|13362616\|dbj\|BAB36569.1\| putative transport/receptor protein [Escherichia coli O157:H7]	260.0	[0..1]	[222..1]
gi\|49176203, gi\|... - gi\|49176203\|ref\|NP_416761.3\| hypothetical protein b2258 [Escherichia coli K12], gb\|AAC75318.1\| putat... gi\|7460138 - gi\|7460138\|pir\|\|H64996 hypothetical protein b2258 - Escherichia coli (strain K-12) gi\|73856257, gi\|... - gi\|74312780\|ref\|YP_311199.1\| putative transport/receptor protein [Shigella sonnei Ss046], gi\|7385625...	257.0	[0..1]	[222..1]
gi\|218365944, gi... - gi\|218559175\|ref\|YP_002392088.1\| hypothetical protein ECS88_2409 [Escherichia coli S88], gi\|21836594... gi\|91073127, gi\|... - gi\|91211553\|ref\|YP_541539.1\| hypothetical protein UTI89_C2541 [Escherichia coli UTI89], gi\|91073127\|... gi\|117624451, gi... - gi\|117624451\|ref\|YP_853364.1\| hypothetical protein APECO1_4303 [Escherichia coli APEC O1], gi\|115513...	248.0	[0..1]	[222..1]
gi\|26109052, gi\|... - gi\|26248647\|ref\|NP_754687.1\| hypothetical protein c2801 [Escherichia coli CFT073], gi\|26109052\|gb\|AA...	241.0	[0..1]	[222..1]
gi\|22125816, gi\|... - gi\|22125816\|ref\|NP_669239.1\| hypothetical protein y1923 [Yersinia pestis KIM], gi\|21958743\|gb\|AAM854...	130.0	[0..79]	[219..3]
gi\|84180564 - gi\|84180564\|gb\|ABC54729.1\| ORF3/QacEdelta1 fusion protein [Vibrio cholerae] gi\|148615590 - gi\|148615590\|gb\|ABQ96632.1\| Orf3/QacEdelta1 fusion protein [Salmonella enterica subsp. enterica sero... gi\|20086228 - gi\|20086228\|gb\|AAM03346.1\| ORF3-QacEdelta1 fusion protein [Proteus mirabilis] gi\|118511776 - gi\|118511776\|emb\|CAD20940.2\| ORF3-QacE (3'CS2) fusion protein [Salmonella enterica subsp. enterica s... gi\|74055072 - gi\|74055072\|gb\|AAZ95873.1\| ORF3-QacEdelta1 fusion protein [Escherichia coli]	118.0	[0..90]	[218..211]
gi\|14022068, gi\|... - gi\|14022068\|dbj\|BAB48678.1\| mll1264 [Mesorhizobium loti MAFF303099], gi\|13471323\|ref\|NP_102892.1\| hy...	117.0	[0..90]	[220..2]
gi\|45436856, gi\|... - gi\|45441993\|ref\|NP_993532.1\| hypothetical protein YP_2203 [Yersinia pestis biovar Microtus str. 9100...	116.0	[0..94]	[219..4]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETGNLLCG DKQTAQTYRA VAGTGAGLSW SCHDALAAGL AERTGRHCLP DVKSEFCLGD  60
   61 AGCSKTVART GIAASLVWGG VH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.747	a.59.1	PAH2 domain
View	Download	0.701	a.7.14	Description not found.
View	Download	0.615	a.7.14	Description not found.
View	Download	0.565	c.55.4	Translational machinery components
View	Download	0.485	a.181.1	Antibiotic binding domain of TipA-like multidrug resistance regulators
View	Download	0.473	a.7.16	Description not found.
View	Download	0.446	a.7.6	Ribosomal protein S20
View	Download	0.440	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.431	a.239.1	Description not found.
View	Download	0.416	a.39.1	EF-hand

Predicted Domain #2

Region A:
Residues: [83-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YWWHCDPREY GVMCLIWGLF SVIIASVAQL SLGFAASHLP PMTHLWDFIA ALLAFGLDAR  60
   61 ILLLGLLGYL LSVFCWYKTL HKLALSKAYA LLSMSYVLVW IASMVLPGWE GTFSLKALLG 120
  121 VACIMSGLML IFLPTTKQRY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.30103
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits